View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12239_high_15 (Length: 301)

Name: NF12239_high_15
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12239_high_15
NF12239_high_15
[»] chr7 (44 HSPs)
chr7 (26-260)||(36902814-36903048)
chr7 (52-150)||(9021800-9021898)
chr7 (52-147)||(20091284-20091379)
chr7 (52-147)||(48983847-48983942)
chr7 (52-150)||(2611262-2611360)
chr7 (52-150)||(7398455-7398553)
chr7 (52-150)||(8171539-8171637)
chr7 (52-150)||(29077224-29077322)
chr7 (54-150)||(18776766-18776862)
chr7 (52-143)||(12596294-12596385)
chr7 (52-147)||(24525688-24525783)
chr7 (60-150)||(6765681-6765771)
chr7 (52-150)||(38414876-38414974)
chr7 (1-53)||(36903052-36903104)
chr7 (54-145)||(10329415-10329506)
chr7 (52-143)||(10955488-10955579)
chr7 (72-150)||(26254017-26254095)
chr7 (52-150)||(27237423-27237521)
chr7 (52-149)||(23859077-23859174)
chr7 (52-144)||(8239691-8239783)
chr7 (52-148)||(18201141-18201237)
chr7 (52-150)||(19692098-19692196)
chr7 (52-145)||(23551075-23551169)
chr7 (60-150)||(23744808-23744898)
chr7 (72-150)||(33162339-33162417)
chr7 (52-150)||(36891582-36891680)
chr7 (52-145)||(47984974-47985068)
chr7 (52-150)||(12981330-12981428)
chr7 (53-150)||(28749715-28749811)
chr7 (53-144)||(20153206-20153297)
chr7 (52-150)||(12419495-12419593)
chr7 (52-114)||(17800257-17800319)
chr7 (65-150)||(21763587-21763672)
chr7 (52-128)||(38971257-38971333)
chr7 (52-150)||(23020484-23020581)
chr7 (178-260)||(26404041-26404123)
chr7 (178-260)||(43655148-43655230)
chr7 (183-260)||(28346789-28346866)
chr7 (52-92)||(25010437-25010477)
chr7 (70-129)||(26917728-26917787)
chr7 (190-260)||(40755061-40755131)
chr7 (190-260)||(40756700-40756770)
chr7 (109-150)||(9014178-9014219)
chr7 (54-87)||(9014825-9014858)
[»] chr5 (52 HSPs)
chr5 (52-150)||(36868874-36868972)
chr5 (52-150)||(33037784-33037882)
chr5 (52-150)||(14318383-14318481)
chr5 (52-150)||(34756364-34756462)
chr5 (52-145)||(9364295-9364388)
chr5 (54-150)||(38869361-38869457)
chr5 (52-143)||(15480094-15480185)
chr5 (55-150)||(28822340-28822435)
chr5 (52-150)||(2024640-2024738)
chr5 (52-150)||(27079015-27079113)
chr5 (52-150)||(34425907-34426005)
chr5 (52-145)||(16198797-16198890)
chr5 (52-144)||(16799331-16799423)
chr5 (52-150)||(1366524-1366622)
chr5 (52-150)||(11242316-11242414)
chr5 (52-142)||(19523203-19523293)
chr5 (52-150)||(30854333-30854431)
chr5 (53-150)||(31194610-31194706)
chr5 (54-143)||(36187884-36187973)
chr5 (52-150)||(23284060-23284158)
chr5 (72-150)||(7338023-7338101)
chr5 (52-150)||(16592072-16592170)
chr5 (60-150)||(22648734-22648824)
chr5 (52-150)||(26718947-26719045)
chr5 (52-150)||(26988691-26988789)
chr5 (52-145)||(40389539-40389632)
chr5 (52-144)||(2530901-2530993)
chr5 (54-150)||(22986556-22986652)
chr5 (52-143)||(2274894-2274985)
chr5 (52-150)||(2412092-2412190)
chr5 (52-150)||(10407465-10407563)
chr5 (52-138)||(27924086-27924172)
chr5 (53-145)||(7670929-7671022)
chr5 (54-150)||(40794325-40794421)
chr5 (57-150)||(10543682-10543775)
chr5 (53-150)||(31881432-31881528)
chr5 (52-144)||(24395743-24395835)
chr5 (178-260)||(5896261-5896343)
chr5 (52-150)||(41911615-41911713)
chr5 (61-147)||(17344969-17345055)
chr5 (108-150)||(606214-606256)
chr5 (183-260)||(25062035-25062112)
chr5 (183-260)||(25084442-25084519)
chr5 (183-260)||(25142412-25142489)
chr5 (190-260)||(5629203-5629273)
chr5 (190-260)||(20881183-20881253)
chr5 (108-150)||(27530543-27530585)
chr5 (190-260)||(27822495-27822565)
chr5 (178-260)||(28472722-28472804)
chr5 (52-129)||(15639647-15639723)
chr5 (190-259)||(20875298-20875367)
chr5 (178-238)||(2496901-2496961)
[»] scaffold1590 (1 HSPs)
scaffold1590 (55-150)||(259-354)
[»] scaffold0039 (1 HSPs)
scaffold0039 (52-150)||(106542-106640)
[»] chr8 (33 HSPs)
chr8 (52-150)||(7944523-7944621)
chr8 (54-150)||(11290190-11290286)
chr8 (54-150)||(34789863-34789959)
chr8 (52-150)||(5973108-5973206)
chr8 (52-150)||(45475821-45475919)
chr8 (52-145)||(42600786-42600879)
chr8 (52-150)||(13534688-13534785)
chr8 (52-150)||(13624228-13624325)
chr8 (52-150)||(23606630-23606728)
chr8 (52-150)||(23798262-23798360)
chr8 (52-150)||(30883333-30883431)
chr8 (52-129)||(5942700-5942777)
chr8 (54-150)||(5860745-5860841)
chr8 (52-144)||(8102916-8103008)
chr8 (54-150)||(41879187-41879283)
chr8 (52-147)||(10917395-10917490)
chr8 (52-150)||(41677174-41677273)
chr8 (52-150)||(2952222-2952320)
chr8 (52-150)||(39332406-39332504)
chr8 (52-150)||(15167416-15167514)
chr8 (52-143)||(37430166-37430257)
chr8 (57-150)||(8646215-8646307)
chr8 (70-150)||(30674404-30674484)
chr8 (52-143)||(5721563-5721654)
chr8 (52-138)||(3048530-3048616)
chr8 (52-150)||(15078762-15078860)
chr8 (52-150)||(25561496-25561592)
chr8 (52-150)||(34048706-34048806)
chr8 (54-150)||(14509984-14510079)
chr8 (70-147)||(23941095-23941172)
chr8 (108-150)||(9108553-9108595)
chr8 (108-150)||(34868178-34868220)
chr8 (190-259)||(7827406-7827475)
[»] chr4 (51 HSPs)
chr4 (52-150)||(54780786-54780884)
chr4 (54-179)||(36118427-36118554)
chr4 (52-150)||(2790741-2790839)
chr4 (52-150)||(38209591-38209689)
chr4 (52-150)||(43455531-43455629)
chr4 (52-150)||(47128996-47129094)
chr4 (52-150)||(52468295-52468393)
chr4 (52-144)||(37777229-37777321)
chr4 (52-143)||(32915394-32915485)
chr4 (52-150)||(10978909-10979007)
chr4 (52-150)||(34768574-34768672)
chr4 (52-150)||(35779326-35779423)
chr4 (57-150)||(32128598-32128691)
chr4 (52-145)||(34027588-34027681)
chr4 (55-149)||(36178684-36178778)
chr4 (52-150)||(39329392-39329490)
chr4 (52-148)||(27112039-27112135)
chr4 (55-143)||(37514671-37514759)
chr4 (54-150)||(48209251-48209347)
chr4 (52-150)||(16845030-16845129)
chr4 (52-147)||(54083245-54083340)
chr4 (52-130)||(4167911-4167989)
chr4 (52-150)||(10042000-10042098)
chr4 (52-150)||(24396943-24397041)
chr4 (52-140)||(5128852-5128940)
chr4 (70-150)||(39655254-39655334)
chr4 (74-145)||(10428202-10428273)
chr4 (52-142)||(13460216-13460306)
chr4 (52-150)||(35465116-35465213)
chr4 (54-143)||(1105543-1105632)
chr4 (52-128)||(40089525-40089601)
chr4 (52-147)||(2135324-2135419)
chr4 (75-150)||(17679432-17679507)
chr4 (52-150)||(19498513-19498609)
chr4 (58-150)||(51691915-51692009)
chr4 (52-149)||(15735104-15735196)
chr4 (52-143)||(37744916-37745008)
chr4 (61-147)||(16882398-16882484)
chr4 (57-150)||(36362871-36362964)
chr4 (72-150)||(51964737-51964818)
chr4 (72-150)||(16922329-16922407)
chr4 (108-150)||(24614018-24614060)
chr4 (179-260)||(21063856-21063937)
chr4 (52-92)||(24969446-24969486)
chr4 (110-150)||(30507122-30507162)
chr4 (55-147)||(45656187-45656279)
chr4 (108-150)||(9578664-9578706)
chr4 (190-260)||(17509223-17509293)
chr4 (190-260)||(43725025-43725095)
chr4 (190-260)||(45048502-45048572)
chr4 (52-92)||(38352313-38352353)
[»] chr3 (40 HSPs)
chr3 (52-147)||(37168374-37168469)
chr3 (52-150)||(3953897-3953995)
chr3 (52-150)||(21582778-21582876)
chr3 (52-150)||(54619204-54619302)
chr3 (52-144)||(8073345-8073437)
chr3 (52-147)||(34290640-34290735)
chr3 (54-147)||(53506888-53506981)
chr3 (52-144)||(44708484-44708576)
chr3 (52-143)||(47467691-47467782)
chr3 (60-150)||(8420341-8420431)
chr3 (52-150)||(38681094-38681192)
chr3 (57-147)||(54407162-54407252)
chr3 (52-145)||(50939239-50939332)
chr3 (58-150)||(25855435-25855526)
chr3 (54-150)||(49393099-49393194)
chr3 (54-145)||(27078575-27078666)
chr3 (54-145)||(27084372-27084463)
chr3 (52-143)||(42098808-42098899)
chr3 (52-150)||(43207239-43207336)
chr3 (52-150)||(54574828-54574926)
chr3 (73-150)||(36716026-36716103)
chr3 (52-143)||(53149322-53149413)
chr3 (52-150)||(789943-790041)
chr3 (52-150)||(9878688-9878786)
chr3 (72-150)||(32319156-32319234)
chr3 (52-150)||(18372486-18372588)
chr3 (53-145)||(36605973-36606065)
chr3 (70-150)||(26279567-26279647)
chr3 (54-144)||(28689368-28689458)
chr3 (55-150)||(52374666-52374761)
chr3 (76-150)||(42453435-42453509)
chr3 (84-143)||(50258631-50258690)
chr3 (184-260)||(21179410-21179486)
chr3 (52-116)||(29620423-29620487)
chr3 (87-150)||(23641319-23641382)
chr3 (52-118)||(29598114-29598179)
chr3 (190-260)||(30891842-30891912)
chr3 (190-260)||(30895341-30895411)
chr3 (190-260)||(47096701-47096771)
chr3 (52-92)||(48157146-48157186)
[»] chr2 (37 HSPs)
chr2 (52-147)||(24410440-24410535)
chr2 (52-150)||(10762566-10762664)
chr2 (52-150)||(12337449-12337547)
chr2 (52-150)||(16097011-16097109)
chr2 (52-150)||(29939863-29939961)
chr2 (52-150)||(9046032-9046131)
chr2 (52-150)||(3155220-3155318)
chr2 (52-150)||(4505897-4505995)
chr2 (52-150)||(6965010-6965108)
chr2 (52-150)||(21665701-21665799)
chr2 (52-150)||(24035546-24035644)
chr2 (52-150)||(38400801-38400899)
chr2 (52-145)||(27506746-27506839)
chr2 (52-143)||(3953009-3953100)
chr2 (52-150)||(26716131-26716230)
chr2 (54-144)||(8907086-8907176)
chr2 (52-150)||(28425711-28425809)
chr2 (72-150)||(34693998-34694076)
chr2 (72-150)||(34716410-34716488)
chr2 (52-143)||(7162787-7162878)
chr2 (52-150)||(13800545-13800644)
chr2 (75-150)||(40636164-40636239)
chr2 (52-150)||(12134041-12134139)
chr2 (52-150)||(16227369-16227467)
chr2 (70-150)||(42029166-42029246)
chr2 (52-118)||(37182673-37182739)
chr2 (75-150)||(5952718-5952791)
chr2 (185-260)||(4199382-4199457)
chr2 (52-150)||(7742134-7742233)
chr2 (52-150)||(11912758-11912856)
chr2 (183-260)||(13587609-13587686)
chr2 (183-260)||(13587851-13587928)
chr2 (55-120)||(22727533-22727598)
chr2 (111-150)||(22727458-22727497)
chr2 (190-260)||(32868891-32868961)
chr2 (190-260)||(32869076-32869146)
chr2 (188-260)||(7087983-7088055)
[»] scaffold0012 (1 HSPs)
scaffold0012 (52-150)||(206490-206588)
[»] chr6 (24 HSPs)
chr6 (52-150)||(13727400-13727498)
chr6 (52-150)||(20711721-20711819)
chr6 (52-150)||(21479501-21479599)
chr6 (52-140)||(21183686-21183774)
chr6 (52-144)||(33774124-33774216)
chr6 (52-143)||(24711007-24711098)
chr6 (52-143)||(30832532-30832623)
chr6 (52-150)||(21280552-21280650)
chr6 (52-150)||(27788689-27788787)
chr6 (52-145)||(28075790-28075883)
chr6 (52-150)||(19737693-19737791)
chr6 (53-150)||(1155850-1155947)
chr6 (52-148)||(2477587-2477683)
chr6 (55-145)||(17353964-17354054)
chr6 (52-150)||(34397864-34397962)
chr6 (60-148)||(6159453-6159541)
chr6 (52-128)||(4036955-4037031)
chr6 (52-144)||(20611797-20611889)
chr6 (70-150)||(30121787-30121867)
chr6 (72-150)||(27314179-27314258)
chr6 (54-145)||(235230-235323)
chr6 (52-92)||(27994776-27994816)
chr6 (178-245)||(32631222-32631289)
chr6 (190-260)||(32696318-32696388)
[»] chr1 (41 HSPs)
chr1 (52-150)||(5316695-5316793)
chr1 (52-150)||(23185442-23185540)
chr1 (52-150)||(38547036-38547134)
chr1 (52-145)||(27559652-27559745)
chr1 (52-147)||(9173026-9173121)
chr1 (52-147)||(9181008-9181103)
chr1 (52-150)||(44655756-44655854)
chr1 (52-150)||(45758509-45758607)
chr1 (54-150)||(38853539-38853635)
chr1 (52-143)||(6771806-6771897)
chr1 (52-143)||(14146315-14146406)
chr1 (52-150)||(1366878-1366976)
chr1 (52-150)||(4971618-4971716)
chr1 (52-150)||(5027564-5027662)
chr1 (52-145)||(17168971-17169064)
chr1 (52-150)||(43235768-43235868)
chr1 (52-143)||(16140070-16140161)
chr1 (54-150)||(26803965-26804058)
chr1 (52-150)||(50881445-50881543)
chr1 (52-145)||(19955732-19955825)
chr1 (55-144)||(40501796-40501885)
chr1 (52-144)||(51607445-51607538)
chr1 (52-143)||(3406433-3406524)
chr1 (52-143)||(3440296-3440387)
chr1 (52-150)||(5533327-5533426)
chr1 (52-150)||(39134722-39134821)
chr1 (52-150)||(50146311-50146409)
chr1 (58-150)||(21740937-21741029)
chr1 (72-150)||(22865461-22865538)
chr1 (54-147)||(33170776-33170869)
chr1 (62-150)||(35392295-35392382)
chr1 (52-147)||(44895667-44895756)
chr1 (52-143)||(41697144-41697235)
chr1 (52-150)||(6221693-6221790)
chr1 (72-150)||(6889646-6889724)
chr1 (72-150)||(6891492-6891570)
chr1 (54-145)||(13913485-13913578)
chr1 (52-150)||(10925953-10926052)
chr1 (89-150)||(17322623-17322684)
chr1 (190-260)||(48344551-48344621)
chr1 (190-260)||(48350424-48350494)
[»] scaffold0182 (1 HSPs)
scaffold0182 (52-150)||(23994-24092)
[»] scaffold0097 (1 HSPs)
scaffold0097 (52-147)||(38929-39024)
[»] scaffold0070 (1 HSPs)
scaffold0070 (52-142)||(1347-1437)
[»] scaffold0018 (1 HSPs)
scaffold0018 (52-146)||(173515-173609)
[»] scaffold0007 (1 HSPs)
scaffold0007 (52-150)||(230860-230958)
[»] scaffold0022 (2 HSPs)
scaffold0022 (54-150)||(40091-40189)
scaffold0022 (54-150)||(138151-138249)
[»] scaffold1320 (1 HSPs)
scaffold1320 (52-150)||(1358-1456)
[»] scaffold0227 (2 HSPs)
scaffold0227 (54-116)||(16033-16095)
scaffold0227 (108-144)||(16125-16161)
[»] scaffold0003 (1 HSPs)
scaffold0003 (71-125)||(351360-351414)
[»] scaffold0027 (1 HSPs)
scaffold0027 (190-260)||(55610-55680)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 26 - 260
Target Start/End: Complemental strand, 36903048 - 36902814
Alignment:
Q  26 aatagataacaaagattctctggctctcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaa 125  Q
    ||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  36903048 aatagataatacagatcctctggctctcctcatgtatacagtactgattttcacctttaggtgtacaacatatatacgacatcttgtatttatctattaa 36902949  T
Q  126 aaaatgtaaatagaacattgttcttnnnnnnntacgtttttattttattacgagaaattaaaacaaaaactactttctccgccctatccaattacgccaa 225  Q
    ||||| |||||||||||||||||||       ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36902948 aaaatttaaatagaacattgttcttaaaaaaatacgtttttattttattactagaaattaagacaaaaactactttctccgccctatccaattacgccaa 36902849  T
Q  226 tttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||||||||||| ||||||| ||||||||||||||    
T  36902848 tttaaattatgatgtcccgtagcagaaaatttatc 36902814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 9021898 - 9021800
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||  |||||||||||| ||||||||| ||||||| | |||||||||    
T  9021898 tcctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatttaaatagcaaattgttctt 9021800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 20091379 - 20091284
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||| |||||||    
T  20091379 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgtt 20091284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 48983942 - 48983847
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||| |||||||    
T  48983942 tcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagatcattgtt 48983847  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 2611360 - 2611262
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||  ||||||||||| ||| ||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  2611360 tcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 2611262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 7398455 - 7398553
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||| |||||||||||||| |||||| |||||||||| | || ||||||||||||| | ||||||| |||||||||||||||||||    
T  7398455 tcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatttatctttcaaaaaatttaaatagaacattgttctt 7398553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 8171637 - 8171539
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||| || |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  8171637 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 8171539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 29077224 - 29077322
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| | |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  29077224 tcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 29077322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 18776862 - 18776766
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| | |||||||| | |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  18776862 ctcatgtatacggtagtcattttcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 18776766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 12596385 - 12596294
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    |||||||| |||||||| | |||||||||| ||||||||||||||||||||| || ||||||||||||| | ||||||| ||||||||||||    
T  12596385 tcctcatgcatacggtagtcattttcacctctgggtgtaccacatatatacggcaccttgtatttatctttaaaaaaatataaatagaacat 12596294  T

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Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 24525783 - 24525688
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | |||||||| |||||||||||| |||||| ||| || ||| ||||||||| ||||||||| ||||||||||||||||    
T  24525783 tcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatacacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 24525688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 6765771 - 6765681
Alignment:
Q  60 tatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||| |||||||||||||||| |||||  | |||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  6765771 tatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 6765681  T

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Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 38414974 - 38414876
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||  ||||||||| ||| ||||    
T  38414974 tcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttatatttatcttttaaaaaatacaaatagaacgttgctctt 38414876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36903104 - 36903052
Alignment:
Q  1 ctaccatagattctaagacagattaaatagataacaaagattctctggctctc 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36903104 ctaccatagattctaagacagattaaatagataacaaagattctctggctctc 36903052  T

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Target: chr7; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 10329506 - 10329415
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||| | |||||||||||||||| | || |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  10329506 ctcatgtatacggtagtcattttcacctttgggttttcctcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattg 10329415  T

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Target: chr7; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 10955488 - 10955579
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | |||||||||| || ||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||    
T  10955488 tcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacat 10955579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 26254017 - 26254095
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| ||||||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  26254017 attttcatctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 26254095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 27237521 - 27237423
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| || |||||||||||||| | |  | |||||||||||  || ||||||||||||| ||||||||| |||||||||||||||||||    
T  27237521 tcctcatgtatacgatagtgattttcacctttagattcatcacatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 27237423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 23859077 - 23859174
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttct 149  Q
    ||||||||||||||||| | ||||||| ||||||||||| | ||||||||||  |  |||||||||||| ||||||||| ||||||||||||| ||||    
T  23859077 tcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatttatcttttaaaaaatttaaatagaacattattct 23859174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 8239691 - 8239783
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||||||||||| ||  || ||||||| | ||||||||| |||||||||||||    
T  8239691 tcctcatatatacggtaatcattttcacatttgggtgtaccacatatatacggcacattatatttattttttaaaaaatataaatagaacatt 8239783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 18201141 - 18201237
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttc 148  Q
    ||||||||| || ||||  |||||||||| || ||||||||||||||||| | |||||||||||||| | ||||||||| |||||||| ||||||||    
T  18201141 tcctcatgtgtaaggtaacgattttcacccttaggtgtaccacatatatatggcatcttgtatttatattttaaaaaatttaaatagatcattgttc 18201237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 19692098 - 19692196
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||  | | |||||||||||| |||||||| |||||||| | || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  19692098 tcctcatgtatacgaaagtcattttcacctttaggtgtaccgcatatatatggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 19692196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 23551169 - 23551075
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||| | |||||||||||||| |||||| |||||||||| || ||| ||||||||| || ||||||| |||||||| |||||    
T  23551169 tcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaaatataaatagatcattg 23551075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 23744808 - 23744898
Alignment:
Q  60 tatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||| ||||||| | |||| |||||||| ||||||| || || ||||||||||||| ||||||||| ||| |||||||||||||||    
T  23744808 tatacggtagtgatttttatctttaggtgtaccgcatatatgcggcaccttgtatttatcttttaaaaaatttaattagaacattgttctt 23744898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 33162417 - 33162339
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||| ||||| ||||    
T  33162417 attttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagagcattgctctt 33162339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 36891582 - 36891680
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||||||||| ||||||  ||||||||  ||  ||||||| |||  ||||||||| ||||||||||||| |||||    
T  36891582 tcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtattcatcatttaaaaaatataaatagaacattattctt 36891680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 47985068 - 47984974
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||  | ||||||||||||||||||||| |||||||||| || ||| ||||| ||| || ||||||| ||||||||||||||    
T  47985068 tcctcatgtatacggtggtcattttcacctttgggtgtaccgcatatatacggcaccttatatttttcttttaaaaaaatataaatagaacattg 47984974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 12981330 - 12981428
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| ||||| ||| ||||||||||||||| ||||||| | |||||| |  | ||||||||||||| ||||||||  ||||||||||||| |||||    
T  12981330 tcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatggaaccttgtatttatcttttaaaaaaattaaatagaacattcttctt 12981428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 28749715 - 28749811
Alignment:
Q  53 cctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||||| | |||||||| | || ||||||| |||||||||| || ||||||||||||| || |||||| ||||||||| |||| ||||    
T  28749715 cctcatgtatacggtagt-attttcacatctgagtgtaccgcatatatacggcaccttgtatttatcttttcaaaaatataaatagaatattgctctt 28749811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 20153206 - 20153297
Alignment:
Q  53 cctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    |||||||||||||| | ||||||||| |||||||| || | |||||||||  ||  |||||||||||| ||||||||| |||||| ||||||    
T  20153206 cctcatgtatacggcagtgattttcatctttgggtttatcgcatatatacaacactttgtatttatcttttaaaaaatttaaataaaacatt 20153297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 12419593 - 12419495
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||| |  || ||||||||| |||||| |||| |||| ||||| |  |  |||||||||||| ||||||||| |||||||||||||||||||    
T  12419593 tcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacattgttctt 12419495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 17800319 - 17800257
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtat 114  Q
    |||||||| |||||||| |||||||||| ||||||||||| ||||||||||| || |||||||    
T  17800319 tcctcatgcatacggtagtgattttcacttttgggtgtacaacatatatacgacaacttgtat 17800257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 21763672 - 21763587
Alignment:
Q  65 ggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||| |||||||||| ||| |||||| | ||||||||||  |  |||||||||||| ||||||||| ||||||||||| |||||||    
T  21763672 ggtagtgattttcactttttggtgtatcgcatatatacgatactttgtatttatcttttaaaaaatttaaatagaacaatgttctt 21763587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 38971257 - 38971333
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaa 128  Q
    ||||| ||| ||||||| |||||||||| ||| ||||||  ||||||||||| || ||||||||||||| |||||||    
T  38971257 tcctcgtgtttacggtagtgattttcacatttaggtgtataacatatatacgacaccttgtatttatcttttaaaaa 38971333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 23020581 - 23020484
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| ||||||||||||||| ||||    |||||||||  || ||| ||||||||| ||||||||| |||||  ||| ||||||||    
T  23020581 tcctcatgtatacggtagtgattttcacctttgagtgt-gtgcatatatacaacaccttatatttatcttttaaaaaatctaaatgaaacgttgttctt 23020484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 26404041 - 26404123
Alignment:
Q  178 agaaattaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||||| |||||||||||||||||||||||   | ||| |||||||||| |||| |||||| |||||| ||| | ||||||||    
T  26404041 agaaataaaaacaaaaactactttctccgcggaaaccatttacgccaatgtaaactatgacctcccgtagcacataatttatc 26404123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 43655230 - 43655148
Alignment:
Q  178 agaaattaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||||| ||||||||||||||||| |||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  43655230 agaaataaaaacaaaaactactttttccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 43655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 28346789 - 28346866
Alignment:
Q  183 ttaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||| ||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  28346789 ttaatacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 28346866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 25010437 - 25010477
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtacc 92  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  25010437 tcctcatgtatacggtagtcattttcacctttgggtgtacc 25010477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 26917787 - 26917728
Alignment:
Q  70 tgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaa 129  Q
    |||||||||| ||| | |||| |||||||||||| |||||||||||| ||| ||||||||    
T  26917787 tgattttcacatttagatgtatcacatatatacgtcatcttgtatttttcttttaaaaaa 26917728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 40755061 - 40755131
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  40755061 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 40755131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 40756770 - 40756700
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  40756770 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 40756700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 9014219 - 9014178
Alignment:
Q  109 ttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| ||||||||| |||||| ||||||||||||    
T  9014219 ttgtatttatcttttaaaaaatttaaataaaacattgttctt 9014178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 9014858 - 9014825
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggt 87  Q
    ||||||||||||||| ||||||||||||||||||    
T  9014858 ctcatgtatacggtagtgattttcacctttgggt 9014825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 52)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 36868972 - 36868874
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||  |||||||||||||||||||    
T  36868972 tcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaaaattaaatagaacattgttctt 36868874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 33037784 - 33037882
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||| |||||| ||||||||||||    
T  33037784 tcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatacgatatcttgtatttatcttttaaaaaatttaaataaaacattgttctt 33037882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 14318481 - 14318383
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||  ||||| |||| |||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  14318481 tcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 14318383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 34756462 - 34756364
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  34756462 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 34756364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 9364295 - 9364388
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  9364295 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattg 9364388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 38869457 - 38869361
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  38869457 ctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctctt 38869361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 15480185 - 15480094
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    |||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  15480185 tcctcatgcatacggtagtcattttcacctctgggtgtaccgcatatatacgacatcttgtatttatcttttaaaaaatataaatagaacat 15480094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 28822435 - 28822340
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  28822435 tcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 28822340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 2024738 - 2024640
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||| ||||||||| ||||||||||| |||||||||||| ||  |||||||||||| | ||||||| |||||||||||||||||||    
T  2024738 tcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatttatctttaaaaaaatttaaatagaacattgttctt 2024640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 27079015 - 27079113
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||| | |||||||||||| |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  27079015 tcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 27079113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 34425907 - 34426005
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| ||||||| | |||| |||||| |||||||||||| || ||||||||||||| |||||||||  ||||||||||||||||||    
T  34425907 tcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatttatcttttaaaaaattgaaatagaacattgttctt 34426005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 16198890 - 16198797
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||| | ||||||||||||||||||| | |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  16198890 tcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 16198797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 16799423 - 16799331
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||| | ||||||||| |||||||||||||    
T  16799423 tcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacggcaccttatatttattttttaaaaaatataaatagaacatt 16799331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 1366622 - 1366524
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| ||||||||| |||||||||| ||| |||||| | |||||||||  ||||||||||||||||  |||||||| |||||||||||||||||||    
T  1366622 tcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatttatcttataaaaaatttaaatagaacattgttctt 1366524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 11242414 - 11242316
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||| || |||||| |||| |||||||||||  ||| |||||||||||| ||||||||  |||||||||||||||||||    
T  11242414 tcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatcattttgtatttatcttttaaaaaaattaaatagaacattgttctt 11242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 19523203 - 19523293
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaaca 142  Q
    |||||||||||| |||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||    
T  19523203 tcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaaca 19523293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 30854333 - 30854431
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| || | |||||||||| || ||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  30854333 tcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 30854431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 31194706 - 31194610
Alignment:
Q  53 cctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||||| | |||||||||| ||||| |||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  31194706 cctcatgtatacggtagt-attttcacctctgggtttaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 31194610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 36187973 - 36187884
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||| | ||||||||| ||||||||||||    
T  36187973 ctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatattttaaaaaatataaatagaacat 36187884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 23284158 - 23284060
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtattta-tctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||| ||||||||||||| |||||||||| || |||||||||| ||| ||||||||| |||||||||||||| ||||    
T  23284158 tcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatacgacaccttgtatttagtct-ttaaaaaatataaatagaacattgctctt 23284060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 7338023 - 7338101
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  7338023 attttcacctttaggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 7338101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 16592170 - 16592072
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| ||||||||| | |||||||||| |||||||||| |||||||||| || | ||||||||||| ||| ||||| |||||||||||||| ||||    
T  16592170 tcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccctgtatttatcttttagaaaatataaatagaacattgctctt 16592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 22648824 - 22648734
Alignment:
Q  60 tatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| ||| ||||| |||||||||| ||| ||||||||||||| ||  |||||||||||| ||||||||| |||||||||||||||||||    
T  22648824 tatacagtagtgattgtcacctttggatgtgccacatatatacgacacattgtatttatcttttaaaaaatttaaatagaacattgttctt 22648734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 26719045 - 26718947
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||| ||||| ||||||||||||||| ||||| | |||||||||| ||  |||||||||||| ||||||| | ||||||||||||| |||||    
T  26719045 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacattattctt 26718947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 26988789 - 26988691
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||| ||||| ||||||||||||||| ||||| | |||||||||| ||  |||||||||||| ||||||| | ||||||||||||| |||||    
T  26988789 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacattattctt 26988691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 40389632 - 40389539
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    |||||||  |||||||| | |||||||||||||| |||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  40389632 tcctcataaatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 40389539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 2530993 - 2530901
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||| ||| |||||||||||||||| ||||||  ||||||||| ||  |||||||||||| ||||||||  |||||||||||||    
T  2530993 tcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatacgacacattgtatttatcttttaaaaaacttaaatagaacatt 2530901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 22986652 - 22986556
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| | |||||||||| |||||||||| |||||||||| ||  |||||||| ||| ||||||||| | |||||||||||| ||||    
T  22986652 ctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacgacactttgtatttgtcttttaaaaaatattaatagaacattgctctt 22986556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 2274894 - 2274985
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||| ||||||||||| | |||||||||| |||||||||  ||||||||||  | ||||||||||||| ||||||||| ||||||||||||    
T  2274894 tcctcgtgtatacggtagtcattttcacctctgggtgtactgcatatatacgataccttgtatttatcttttaaaaaatataaatagaacat 2274985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 2412092 - 2412190
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||| |||||||||| ||||| || | | |||||||||| ||  |||||||||| | ||||||||| |||||||||||||||||||    
T  2412092 tcctcatgtatacagtagtgattttcacatttggatgcatcgcatatatacgacactttgtatttattttttaaaaaatttaaatagaacattgttctt 2412190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 10407465 - 10407563
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||| |||||||| | |||||||| ||| | ||||| |||||| |||| || ||||| ||||||| ||||||||| |||||||||||||||||||    
T  10407465 tcctcatgcatacggtagtaattttcacttttagatgtacaacatatgtacgacaccttgtgtttatcttttaaaaaatttaaatagaacattgttctt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 27924086 - 27924172
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatag 138  Q
    ||||||||||||||||| | ||||| |||||||| |||||| |||||||||| || ||| ||||||||| ||||||||| |||||||    
T  27924086 tcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatag 27924172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 7670929 - 7671022
Alignment:
Q  53 cctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattg 145  Q
    |||||||||||||||| | |||||||||||||||||||||  | ||||||| || ||| ||||||||| || ||||||| ||||||||||||||    
T  7670929 cctcatgtatacggtagtcattttcacctttgggtgtaccgtaaatatacggcaccttatatttatcttttaaaaaaatataaatagaacattg 7671022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 40794421 - 40794325
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| |||||||||||||| |||||| || |||| |||| |   |||||||| ||| ||||||||| |||||| ||||||||||||    
T  40794421 ctcatgtatacggtagtgattttcaccttttggtgtatcatatatttacggctctttgtatttgtcttttaaaaaatttaaataaaacattgttctt 40794325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 10543682 - 10543775
Alignment:
Q  57 atgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||||||||||||||| |||| | |||||||||  || ||| ||||||||| ||||||||| ||| | ||||||| |||||    
T  10543682 atgtatacggtagtgattttcacctttggatgtatcgcatatatacatcaccttatatttatcttttaaaaaatttaagtggaacattattctt 10543775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 31881528 - 31881432
Alignment:
Q  53 cctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||||| | ||||||| || ||| ||| || |||||||||| || | ||||||||||| ||||||||| |||||||||||||| ||||    
T  31881528 cctcatgtatacggtagt-attttcatctctggatgttccgcatatatacggcaccgtgtatttatcttttaaaaaatataaatagaacattgctctt 31881432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 24395743 - 24395835
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||| ||||||||  |||||||||||||||| ||||    ||||||||  || ||||||||||||| ||||||||| |||||||||||||    
T  24395743 tcctcatctatacggtggtgattttcacctttggatgtattgtatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacatt 24395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 5896261 - 5896343
Alignment:
Q  178 agaaattaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||||| |||||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  5896261 agaaataaaaacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 5896343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 41911713 - 41911615
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||||| || ||||||| || |||||||||||| | |||||||| || ||||||||| ||| ||||||||  ||| | |||||||||||||    
T  41911713 tcctcatatatacgatagtgatttttacttttgggtgtaccgcttatatacgacaccttgtatttctcttttaaaaaaattaagttgaacattgttctt 41911615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 17344969 - 17345055
Alignment:
Q  61 atacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctat-taaaaaatgtaaatagaacattgtt 147  Q
    |||||||| | ||||| | ||||||||||||| |||||| | | |||||||||||||| ||| |||||||| ||||||||||||||||    
T  17344969 atacggtagtaatttttatctttgggtgtaccgcatatacatgacatcttgtatttat-tatataaaaaatttaaatagaacattgtt 17345055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 606214 - 606256
Alignment:
Q  108 cttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  606214 cttgtatttatcttttaaaaaatttaaatagaacattgttctt 606256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 25062112 - 25062035
Alignment:
Q  183 ttaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||| ||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  25062112 ttaatacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 25062035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 25084519 - 25084442
Alignment:
Q  183 ttaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||| ||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  25084519 ttaatacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 25084442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 25142489 - 25142412
Alignment:
Q  183 ttaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||| ||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  25142489 ttaatacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 25142412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 5629273 - 5629203
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  5629273 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 5629203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 20881253 - 20881183
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  20881253 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 20881183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 27530543 - 27530585
Alignment:
Q  108 cttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||| |||| ||||||||| |||||||||||||||||||    
T  27530543 cttgtattaatcttttaaaaaatttaaatagaacattgttctt 27530585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 27822565 - 27822495
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  27822565 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 27822495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 28472804 - 28472722
Alignment:
Q  178 agaaattaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||||| ||||||||||||||||||||| |   ||||| |||||||||| |||| ||| || |||||| ||| | ||||||||    
T  28472804 agaaataaaaacaaaaactactttctccacaacatccatttacgccaatgtaaactataacctcccgtagcacataatttatc 28472722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 15639647 - 15639723
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaa 129  Q
    |||| |||||||||  | ||||||||| |||||| |||| | |||||||||| || ||||||||||||| ||||||||    
T  15639647 tccttatgtatacgacagtgattttcatctttggatgtatcgcatatatacgtcaccttgtatttatct-ttaaaaaa 15639723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 20875298 - 20875367
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttat 259  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | |||||||    
T  20875298 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttat 20875367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 2496961 - 2496901
Alignment:
Q  178 agaaattaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgac 238  Q
    |||||| |||||||||||||||||||||||   | ||| |||||||||| |||| ||||||    
T  2496961 agaaataaaaacaaaaactactttctccgcggcaaccatttacgccaatgtaaactatgac 2496901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 354 - 259
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| |||||||||| |||||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  354 tcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 106542 - 106640
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||||||||    
T  106542 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgttctt 106640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 7944621 - 7944523
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||| | ||||||||| |||||| ||||||||||||    
T  7944621 tcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaatttaaataaaacattgttctt 7944523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 11290190 - 11290286
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||||||| || ||||||||||||| ||||||||| |||||| ||||||||||||    
T  11290190 ctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaataaaacattgttctt 11290286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 34789959 - 34789863
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| | || |||||||||||| ||||||    
T  34789959 ctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatttatcttttaagagatttaaatagaacatcgttctt 34789863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 5973206 - 5973108
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| ||||||||||| ||||||||| || ||||||||| ||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  5973206 tcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 5973108  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 45475821 - 45475919
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  45475821 tcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 45475919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 42600786 - 42600879
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||| |||||||| |||||    
T  42600786 tcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg 42600879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 13534785 - 13534688
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  13534785 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatataaatagaacattgctctt 13534688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 13624325 - 13624228
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  13624325 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatataaatagaacattgctctt 13624228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 23606728 - 23606630
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||| ||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  23606728 tcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 23606630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 23798360 - 23798262
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||| |||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  23798360 tcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 23798262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 30883333 - 30883431
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| ||  |||||||||||| ||||||||| |||||||||||||| ||||    
T  30883333 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatataaatagaacattgctctt 30883431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 5942700 - 5942777
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaa 129  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||    
T  5942700 tcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaaa 5942777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 5860841 - 5860745
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||| |||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  5860841 ctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 5860745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 8102916 - 8103008
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||||||  || ||||||||||||| ||||||||| |||||| ||||||    
T  8102916 tcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatttatcttttaaaaaatttaaatataacatt 8103008  T

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Target: chr8; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 41879187 - 41879283
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||| ||||| | |||||||||||||| |||||| ||||||||||  | ||||||||||||| ||||||||| |||||||||||||||||||    
T  41879187 ctcatgtattcggtagtcattttcacctttggatgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgttctt 41879283  T

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Target: chr8; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 10917395 - 10917490
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    |||||||||||| |||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||| |||||||    
T  10917395 tcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgtt 10917490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 41677273 - 41677174
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||| |||||||||||||| | |||| | |||||||||| |||||||||||||||| || ||||||| |||||||||||||||||||    
T  41677273 tcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatttatcttttaaaaaaatttaaatagaacattgttctt 41677174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 2952320 - 2952222
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||| || |||||||||| |||||||||| ||  |||||||||||| ||||||||| |||||||||||||| ||||    
T  2952320 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctctt 2952222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 39332504 - 39332406
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||||||||| |||||| | |||||| | || ||||||||||||| || |||||  |||||||||||||||||||    
T  39332504 tcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatttatctttttaaaaaattaaatagaacattgttctt 39332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 15167514 - 15167416
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| || |||||||||| |||||||||| | |||||||||  ||  || ||||||||| ||||||||| |||||||||||||||||||    
T  15167514 tcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatacaacactttatatttatcttttaaaaaatttaaatagaacattgttctt 15167416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 37430257 - 37430166
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | ||||| |||| | |||||| | |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  37430257 tcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 37430166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 8646215 - 8646307
Alignment:
Q  57 atgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||||||||| |||| |||||   ||||||||||  | ||||||||||||| ||||||||| |||||||||||||||||||    
T  8646215 atgtatacggtagtgattttcacatttgcgtgtatg-catatatacgataccttgtatttatcttttaaaaaatttaaatagaacattgttctt 8646307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 30674484 - 30674404
Alignment:
Q  70 tgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| ||||| | |||||||||| || ||| ||||||||| |||||| || |||||||||||||||||||    
T  30674484 tgattttcacctttgagtgtatcgcatatatacgacaccttatatttatcttttaaaacatttaaatagaacattgttctt 30674404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 5721563 - 5721654
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    |||||| |||||||||| |||||||||| ||||||||||||   |||||| | || ||||||||||||| ||||||||  ||||||||||||    
T  5721563 tcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatttatcttttaaaaaaattaaatagaacat 5721654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 3048616 - 3048530
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatag 138  Q
    ||||| ||||||||||| | ||||||| || | |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||    
T  3048616 tcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatag 3048530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 15078762 - 15078860
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| || |||||||||| ||||||||||   |||||||||  || ||| ||||||||| ||||||| | ||||||||||||| |||||    
T  15078762 tcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacattattctt 15078860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 25561592 - 25561496
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| | |||||||||| ||||||| || | |||||||||| || ||||||||||||| |||||| || ||||||||||||| |||||    
T  25561592 tcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatttatct-ttaaaagatttaaatagaacattattctt 25561496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 34048806 - 34048706
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtacc--acatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttct 149  Q
    ||||||||||||| ||| ||||||||| ||||||||||| |  | ||||||||| ||  |||||||||||| ||||||  | ||||||||||||||||||    
T  34048806 tcctcatgtatacagtagtgattttcatctttgggtgtatcatatatatatacgacacattgtatttatcttttaaaatgtttaaatagaacattgttct 34048707  T
Q  150 t 150  Q
    |    
T  34048706 t 34048706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 14510079 - 14509984
Alignment:
Q  54 ctcatgtatacggtactgatttt-cacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| ||||||| ||| ||||||||||||   |||||||| || ||| ||||| ||| ||||||||| ||||| |||||||||||||    
T  14510079 ctcatgtatacggtagtgatttttcacatttgggtgtaccg--tatatacgacaccttatatttgtcttttaaaaaatttaaattgaacattgttctt 14509984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 23941172 - 23941095
Alignment:
Q  70 tgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||| ||||||||||| | | |||||| | || ||||||||||||| ||||||||| |||||| |||||||||    
T  23941172 tgattttcatctttgggtgtatcgcttatatatgacaccttgtatttatcttttaaaaaatttaaataaaacattgtt 23941095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 9108553 - 9108595
Alignment:
Q  108 cttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  9108553 cttgtatttatcttttaaaaaatttaaatagaacattgttctt 9108595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 34868220 - 34868178
Alignment:
Q  108 cttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||    
T  34868220 cttgtatttatcttttaaaaaatttaaatagaacattattctt 34868178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 7827406 - 7827475
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttat 259  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | |||||||    
T  7827406 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttat 7827475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 54780786 - 54780884
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  54780786 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 54780884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 36118554 - 36118427
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttc--ttn 151  Q
    ||||||||||||||| |||||||||  |||||||||| |||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||  ||     
T  36118554 ctcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttcattta 36118455  T
Q  152 nnnnnntacgtttttattttattacgag 179  Q
          ||||||||||||||||||||||    
T  36118454 aaaaaatacgtttttattttattacgag 36118427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 2790839 - 2790741
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||||  | ||| ||||||||| ||||||||| |||||||||||||||||||    
T  2790839 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgttctt 2790741  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 38209689 - 38209591
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  38209689 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 38209591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 43455629 - 43455531
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  43455629 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 43455531  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 47128996 - 47129094
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||| |||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  47128996 tcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttctt 47129094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 52468295 - 52468393
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||| |||||||| |||||||||||||||| ||||  ||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  52468295 tcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 52468393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 37777321 - 37777229
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||    
T  37777321 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacatt 37777229  T

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Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 32915394 - 32915485
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | ||||| |||| ||||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  32915394 tcctcatgtatacggtaatcatttttacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 32915485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 10978909 - 10979007
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||| | |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  10978909 tcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 10979007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 34768672 - 34768574
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  34768672 tcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 34768574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 35779423 - 35779326
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||||||||||||| ||||||||| | |||||||||||| ||||    
T  35779423 tcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat-aatagaacattgctctt 35779326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 32128598 - 32128691
Alignment:
Q  57 atgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  32128598 atgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctctt 32128691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 34027588 - 34027681
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||| ||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  34027588 tcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 34027681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 36178684 - 36178778
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttct 149  Q
    ||||||||| |||| |||||||||| |||||||||| | |||||||||| || ||||||||||||| ||||| ||| ||||||||||||||||||    
T  36178684 tcatgtataaggtagtgattttcacatttgggtgtatcgcatatatacgacaccttgtatttatcttttaaataatttaaatagaacattgttct 36178778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 39329490 - 39329392
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| |||||||||||  |||||||| ||||||||||| |||||||||||  || ||||||||||||| ||||||||| |||| ||||||||||||||    
T  39329490 tcctcctgtatacggtatggattttcatctttgggtgtatcacatatatacaacaccttgtatttatcttttaaaaaatttaaagagaacattgttctt 39329392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 27112039 - 27112135
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttc 148  Q
    ||||||||||||||||| |||||||||| ||| |||||| | |||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||    
T  27112039 tcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattgttc 27112135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 37514671 - 37514759
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    |||||||||||||| | |||||||||| || ||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  37514671 tcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 37514759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 48209251 - 48209347
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| | || ||||| | |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  48209251 ctcatgtatacggtagtcatattcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 48209347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 16845030 - 16845129
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||| |||||||||| ||||||||||| || ||| ||||||||| || ||||||| |||||||||||||| ||||    
T  16845030 tcctcatgtatacggtagtcattttcaccgttgggtgtactacatatatacgacaccttatatttatcttttaaaaaaatataaatagaacattgctctt 16845129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 54083340 - 54083245
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | ||||| | ||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||| |||||||    
T  54083340 tcctcatgtatacggtagtcatttttatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgtt 54083245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 4167989 - 4167911
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaat 130  Q
    |||||||||||| |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||| |||||||||    
T  4167989 tcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaat 4167911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 10042098 - 10042000
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| ||||||||||| |||||||||| ||| |||||| |||||| ||||| || ||||||||||| | || |||||| |||||||||||||||||||    
T  10042098 tcctcctgtatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatttatttttttaaaaatttaaatagaacattgttctt 10042000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 24396943 - 24397041
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| || ||||||||||||||| ||||| |||||||||||  || ||| ||||||||| ||||||||| |||||| || |||||||||    
T  24396943 tcctcatgtatacgatagtgattttcacctttgagtgtatcacatatatactgcaccttatatttatcttttaaaaaatttaaataaaatattgttctt 24397041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 5128940 - 5128852
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaa 140  Q
    ||||||||||||||||| | |||||||||| |||||| ||  |||||||||| || ||||||||||||| ||||||||| |||||||||    
T  5128940 tcctcatgtatacggtagtcattttcacctctgggtgcactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaa 5128852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 39655334 - 39655254
Alignment:
Q  70 tgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||||||||| ||||||| ||  |  |||||||||||| ||||||||| |||||||||||||||||||    
T  39655334 tgattttcacctttgggtgtaccgcatatatgcggaactttgtatttatcttttaaaaaatttaaatagaacattgttctt 39655254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 10428273 - 10428202
Alignment:
Q  74 tttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    |||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||||    
T  10428273 tttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 10428202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 13460216 - 13460306
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaaca 142  Q
    |||| |||||||||||| | |||||||| | ||||| |||| |||||||||| || ||||||||||||| ||||||||| |||||||||||    
T  13460216 tccttatgtatacggtagtcattttcacatctgggtataccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaaca 13460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 35465116 - 35465213
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||| ||| |||||||| |||||||||| || ||| |||||||||  |||||||| |||||| ||||||||||||    
T  35465116 tcctcatgtatacggtagttattttcacttttaggtgtaccgcatatatacg-caccttttatttatcttgtaaaaaatataaatataacattgttctt 35465213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 1105543 - 1105632
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    |||||||||| |||| | |||||||||| | |||||||| ||||||||||  | ||||||||||||| ||||||||| ||||||||||||    
T  1105543 ctcatgtatatggtagtcattttcacctctaggtgtaccgcatatatacgataccttgtatttatcttttaaaaaatataaatagaacat 1105632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 40089525 - 40089601
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaa 128  Q
    ||||||||||||||||| | |||||||||||||| |||||| |||||||||| || ||| ||||||||| |||||||    
T  40089525 tcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaa 40089601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 2135419 - 2135324
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||| |||||| || |||| || |||||||| |||| | |||||||||| || ||||||||||||| ||||||||| ||||||||| ||||||    
T  2135419 tcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattgtt 2135324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 17679432 - 17679507
Alignment:
Q  75 ttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||| |||| ||||    
T  17679432 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaatattgctctt 17679507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 19498513 - 19498609
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||| | |||||||||||||| |||||| ||||||  || || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  19498513 tcctcatgtatacagtagtcattttcacctttggctgtaccgcatata--cggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 19498609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 51692009 - 51691915
Alignment:
Q  58 tgtatacggtactgattttcacctttg--ggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||| |||| |||||||||| |||   |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  51692009 tgtatatggtagtgattttcactttttttggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgctctt 51691915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 15735104 - 15735196
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttct 149  Q
    ||||||||||||||||| |||||||||  ||| |||||     ||||||||| | |||||||||||||| ||||||||| ||||||||||| ||||||    
T  15735104 tcctcatgtatacggtaatgattttcattttttggtgt-----atatatacgacgtcttgtatttatcttttaaaaaatttaaatagaacactgttct 15735196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 37745008 - 37744916
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacat 143  Q
    |||||| |||||||||| |||||||||||||||| |||| | ||||||| || || ||| ||||||||| || ||||||| ||||||||||||    
T  37745008 tcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatttatcttttaaaaaaatttaaatagaacat 37744916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 16882484 - 16882398
Alignment:
Q  61 atacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    |||||||| | |||||||||||| ||||||||  ||||| ||| || ||| ||||||||| ||||||| | ||||||||||||||||    
T  16882484 atacggtagtcattttcaccttttggtgtaccgtatatacacggcaccttatatttatcttttaaaaagtataaatagaacattgtt 16882398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 36362964 - 36362871
Alignment:
Q  57 atgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||| |||||| ||| ||||||||||   |||||||||| ||  |||||||||||| ||||||||| |||| ||| ||||||||||    
T  36362964 atgtatatggtagtgatttccacatttgggtgtattgcatatatacggcactttgtatttatcttttaaaaaatttaaacagagcattgttctt 36362871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 51964737 - 51964818
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt---aaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||| |||||||| | |||||||||| || ||||||||||||| ||   ||||||| |||||||||||||| ||||    
T  51964737 attttcacctctgggtgtatcgcatatatacggcaccttgtatttatctttttaaaaaaaatataaatagaacattgctctt 51964818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 16922407 - 16922329
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||||  |||  |||||||||| ||  || ||||||||| ||||||||| |||||||||||||| ||||    
T  16922407 attttcacctttggggatactgcatatatacgacactttatatttatcttttaaaaaatataaatagaacattgctctt 16922329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 24614018 - 24614060
Alignment:
Q  108 cttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  24614018 cttgtatttatcttttaaaaaatttaaatagaacattgttctt 24614060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 21063937 - 21063856
Alignment:
Q  179 gaaattaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||| |||||||||| |||||||||| |   ||||| |||||||||| ||||||||||| |||||| ||| | ||||||||    
T  21063937 gaaataaaaacaaaaattactttctccacatcatccatttacgccaatgtaaattatgacctcccgtagcacataatttatc 21063856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 24969446 - 24969486
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtacc 92  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  24969446 tcctcatgtatacggtagtcattttcacctttgggtgtacc 24969486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 30507162 - 30507122
Alignment:
Q  110 tgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  30507162 tgtatttatcttttaaaaaatttaaatagaacattgttctt 30507122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 45656187 - 45656279
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||| |  |||||||||| ||||| | || | |||||||| | || |||| |||||||| ||||||||| |||||| |||||||||    
T  45656187 tcatgtatacgttcgtgattttcacatttggatttatcgcatatatatgacaccttgcatttatcttttaaaaaatttaaataaaacattgtt 45656279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 9578706 - 9578664
Alignment:
Q  108 cttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||    
T  9578706 cttgtatttatcttttaaaaaatataaatagaacattgctctt 9578664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 17509293 - 17509223
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  17509293 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 17509223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 43725095 - 43725025
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  43725095 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 43725025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 45048572 - 45048502
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  45048572 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 45048502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 38352353 - 38352313
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtacc 92  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  38352353 tcctcatgtacacggtagtcattttcacctttgggtgtacc 38352313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 37168374 - 37168469
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||    
T  37168374 tcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 37168469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 3953995 - 3953897
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||  | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  3953995 tcctcatgtatacggttttcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttctt 3953897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 21582778 - 21582876
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||| ||||||||||||    
T  21582778 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaataaaacattgttctt 21582876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 54619302 - 54619204
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  54619302 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 54619204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 8073437 - 8073345
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| | |||||||| |||||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||    
T  8073437 tcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 8073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 34290735 - 34290640
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||| ||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||    
T  34290735 tcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 34290640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 53506981 - 53506888
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||||  | ||| ||||||||| ||||||||| ||||||||||||||||    
T  53506981 ctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgtt 53506888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 44708484 - 44708576
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| | |||||||||||||||||||||  ||||||||| || ||| ||||||||| ||||||||| |||||||||||||    
T  44708484 tcctcatgtatacggtagtcattttcacctttgggtgtaccggatatatacggcaccttatatttatcttttaaaaaatataaatagaacatt 44708576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 47467691 - 47467782
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | |||||||||| |||||||| | |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  47467691 tcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 47467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 8420341 - 8420431
Alignment:
Q  60 tatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| | |||||||||| ||||||||||| ||||||||||| || ||||||||||||| ||||||||| ||||||||||||| |||||    
T  8420341 tatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattattctt 8420431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 38681192 - 38681094
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| ||| |||||| |||| ||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  38681192 tcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 38681094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 54407252 - 54407162
Alignment:
Q  57 atgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    |||||||||||| | |||||||||||||| |||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||    
T  54407252 atgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 54407162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 50939332 - 50939239
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||| | ||||| |||||||||||||||| ||||||||| || ||| ||||||||| ||||||||| |||||||| |||||    
T  50939332 tcctcatgtatacggtagtcatttttacctttgggtgtaccatatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg 50939239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 25855435 - 25855526
Alignment:
Q  58 tgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||| ||||||||| ||||||||| || ||||||||||| || |||||| |||||| ||||||||| |||||||||||||||||||    
T  25855435 tgtatacggtagtgattttcaactttgggtgcactacatatatacgacaccttgta-ttatcttttaaaaaatttaaatagaacattgttctt 25855526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 49393099 - 49393194
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| | ||||| |||||||||||||| ||||||||||| |  ||||||||||||| ||||||||| |||| ||||||||||||||    
T  49393099 ctcatgtatacggtagtaatttttacctttgggtgtac-acatatatacgacgccttgtatttatcttttaaaaaatttaaagagaacattgttctt 49393194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 27078666 - 27078575
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||| | |||||||||| ||||| |||| |||||||||| ||  |||||||||||| ||||||||| ||||||||||||||    
T  27078666 ctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattg 27078575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 27084463 - 27084372
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||| | |||||||||| ||||| |||| |||||||||| ||  |||||||||||| ||||||||| ||||||||||||||    
T  27084463 ctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattg 27084372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 42098808 - 42098899
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | |||||||||| || || |||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  42098808 tcctcatgtatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 42098899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 43207336 - 43207239
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||||||  |||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  43207336 tcctcatgtatacggtagtcattttcacctttga-tgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 43207239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 54574926 - 54574828
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||| ||||||| || |||||||||||| ||||||||||  | ||||||||||| | || |||||| |||||||||||||||||||    
T  54574926 tcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatttatattttgaaaaatttaaatagaacattgttctt 54574828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 36716103 - 36716026
Alignment:
Q  73 ttttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  36716103 ttttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 36716026  T

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Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 53149413 - 53149322
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | ||||| | || || ||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  53149413 tcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 53149322  T

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Target: chr3; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 789943 - 790041
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||  ||||||| |||||||||||||| ||||||||| | || |||||||||||   ||||||||| ||||||||| |||||||||    
T  789943 tcctcatgtatatggtggtgatttttacctttgggtgtacaacatatatatgacaccttgtatttattgtttaaaaaatttaaatagaagattgttctt 790041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 9878786 - 9878688
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||| ||||||||| || | ||||||||||||||||||||| |||||||||  || ||| ||||||||| ||||||||| ||||||||| |||| ||||    
T  9878786 tccttatgtatacgatagtcattttcacctttgggtgtaccgcatatatactgcaccttatatttatcttttaaaaaatataaatagaatattgctctt 9878688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 32319234 - 32319156
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||||||| |||||||||  ||  |||||||||||| ||||||||| ||||||||||||| |||||    
T  32319234 attttcacctttgggtgtaccgcatatatacaacactttgtatttatcttttaaaaaatttaaatagaacattattctt 32319156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 18372486 - 18372588
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccac----atatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | |||||||||| || ||||||| |    ||||||||| || ||||||||||||| ||||||||| |||||||||||||| |    
T  18372486 tcctcatgtatacggtagtcattttcacctctgtgtgtaccgcgcgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgct 18372585  T
Q  148 ctt 150  Q
    |||    
T  18372586 ctt 18372588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 36605973 - 36606065
Alignment:
Q  53 cctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatc-tattaaaaaatgtaaatagaacattg 145  Q
    |||||||||||||||| | ||||||| || |||||||||| |||||||||| || |||||||||||| | ||||||||| ||||||||||||||    
T  36605973 cctcatgtatacggtagt-attttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattg 36606065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 26279567 - 26279647
Alignment:
Q  70 tgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||| |||||||||||   |||||||||| || ||| ||||||||| ||||||||| |||||||||||||||||||    
T  26279567 tgattttcatctttgggtgtattgcatatatacgacaccttctatttatcttttaaaaaatttaaatagaacattgttctt 26279647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 28689458 - 28689368
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||| | |||||||||||||||| | || | |||||||||| || ||||||||||||| ||  ||||| |||||||||||||    
T  28689458 ctcatgtatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatttatctttttgaaaatttaaatagaacatt 28689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 52374666 - 52374761
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| |||||||| ||||| | |||| | ||| |||||| ||  |||||||||| ||  ||||||| |||||||||||||||||||    
T  52374666 tcatgtatacggtagtgattttctcctttagatgtatcgcatctatacgacacattgtatttatttaaaaaaaaatttaaatagaacattgttctt 52374761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 42453435 - 42453509
Alignment:
Q  76 tcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||| |||||| | |||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||||    
T  42453435 tcacctttaggtgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaattgaacattgttctt 42453509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 50258690 - 50258631
Alignment:
Q  84 gggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||| |||||||||| || ||||||||||| | ||||||||| ||||||||||||    
T  50258690 gggtgtaccgcatatatacgacaccttgtatttattttttaaaaaatataaatagaacat 50258631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 21179410 - 21179486
Alignment:
Q  184 taaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||| ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  21179410 taaaaaaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 21179486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 29620487 - 29620423
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtattt 116  Q
    ||||||||||||||||| | |||||||||| ||| | |||| |||||||||| || |||||||||    
T  29620487 tcctcatgtatacggtagtcattttcacctctggatataccgcatatatacggcaccttgtattt 29620423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 23641382 - 23641319
Alignment:
Q  87 tgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||| |||||||||| ||  |||||||||||| ||||||||| |||||||||  ||||||||    
T  23641382 tgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaatgttgttctt 23641319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 29598114 - 29598179
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttat 118  Q
    ||||||||||||||||| |||||| || ||||| ||||| ||||||||||||  | |||||||||||    
T  29598114 tcctcatgtatacggtagtgattt-catctttgagtgtatcacatatatacggaaccttgtatttat 29598179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 30891842 - 30891912
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  30891842 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 30891912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 30895411 - 30895341
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  30895411 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 30895341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 47096771 - 47096701
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  47096771 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 47096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 48157146 - 48157186
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtacc 92  Q
    ||||||||||||| ||| | |||||||||||||||||||||    
T  48157146 tcctcatgtatacagtagtcattttcacctttgggtgtacc 48157186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 24410440 - 24410535
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||    
T  24410440 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 24410535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 10762664 - 10762566
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||  || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  10762664 tcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatttatcttttaaaaaatataaatagaacattgctctt 10762566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 12337547 - 12337449
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||||||| | || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  12337547 tcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 12337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 16097011 - 16097109
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||| | ||||||||||||||||||||  |||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  16097011 tcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 16097109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 29939961 - 29939863
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || |||||||||||||  |||||||| |||||||||||||| ||||    
T  29939961 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttgtaaaaaatataaatagaacattgctctt 29939863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 9046032 - 9046131
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| || ||||||| |||||||||||||||||||    
T  9046032 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaaatataaatagaacattgttctt 9046131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 3155220 - 3155318
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| | |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  3155220 tcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 3155318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 4505897 - 4505995
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||| |||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  4505897 tcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 4505995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 6965010 - 6965108
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| ||  |||||||||||| ||||||||| |||||||||||||| ||||    
T  6965010 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctctt 6965108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 21665799 - 21665701
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||| ||| | |||| |||||||||||| || | ||||||||||| ||||||||| |||||||||||||||||||    
T  21665799 tcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacaccgtgtatttatcttttaaaaaatttaaatagaacattgttctt 21665701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 24035644 - 24035546
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||| ||||| |||||||||||||| |||||| | ||| |||||| || ||||||||||||| ||||||||| |||||||||||||||||||    
T  24035644 tcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 24035546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 38400801 - 38400899
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||||||||  |||| | |||||||| | || ||||||||||||| ||||||||| |||||||||||||||||||    
T  38400801 tcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 38400899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 27506839 - 27506746
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||| ||| | ||||| |||||||||||||||||||||||||| || ||| ||||||||| ||||||||| |||||||| |||||    
T  27506839 tcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg 27506746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 3953009 - 3953100
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    |||||||| |||||||| | |||||||||| |||||||||| ||| |||||| || ||||||||||||| ||||||||| ||||||||||||    
T  3953009 tcctcatgcatacggtaatcattttcacctctgggtgtaccgcatgtatacggcaccttgtatttatcttttaaaaaatataaatagaacat 3953100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 26716131 - 26716230
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||| | || ||| ||||||||| || ||||||| |||||||||||||| ||||    
T  26716131 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatatggcaccttatatttatcttttaaaaaaatataaatagaacattgctctt 26716230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 8907176 - 8907086
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||| | ||||| |||| |||||||||| |||||||||| |  ||||||||||||| ||||||||| |||||||||||||    
T  8907176 ctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcgccttgtatttatcttttaaaaaatataaatagaacatt 8907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 28425809 - 28425711
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||| |||| |||||||||| |||||||||||  |||||||||| || ||||||||||||| ||||||  | |||||||||||||||||||    
T  28425809 tcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatttatcttttaaaatttttaaatagaacattgttctt 28425711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 34693998 - 34694076
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| |||| ||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  34693998 attttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 34694076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 34716410 - 34716488
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| |||| ||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  34716410 attttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 34716488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 7162787 - 7162878
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||| ||||||||| | |||||||||| || || |||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  7162787 tcctcatatatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 7162878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 13800644 - 13800545
Alignment:
Q  52 tcctcatgtatacggtactgattttcaccttt-gggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| ||||||  ||| |||||||||||||| ||||||| | |||||||||| || ||| ||||||||| ||||||||| |||||||||||||||||||    
T  13800644 tcctcgtgtatatagtagtgattttcaccttttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatttaaatagaacattgttctt 13800545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 40636164 - 40636239
Alignment:
Q  75 ttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  40636164 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 40636239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 12134139 - 12134041
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||| |||||||||||| |||||||||| |||||||||| | ||||||||||  | ||||||||||||| |||||   | |||||||||||||||||||    
T  12134139 tcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatttatcttttaaattttttaaatagaacattgttctt 12134041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 16227467 - 16227369
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||| |||||||  ||| ||||||||| || | |||||| |||||||||||| || ||||||||||||| ||||||||| ||||||||| |||||||||    
T  16227467 tccttatgtatatagtagtgattttcatctatcggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaaaattgttctt 16227369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 42029166 - 42029246
Alignment:
Q  70 tgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| ||||||| |||| |||| | || ||| ||||||||| ||||||||| |||||||||||||||||||    
T  42029166 tgattttcacctttaggtgtacaacatgtatatgacaccttatatttatcttttaaaaaatttaaatagaacattgttctt 42029246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 37182673 - 37182739
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttat 118  Q
    ||||||||||||||||| |||||||||| ||||||||||   |||||||||| || |||||||||||    
T  37182673 tcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatacgacaccttgtatttat 37182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 5952791 - 5952718
Alignment:
Q  75 ttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||  |||||| ||||||| ||||    
T  5952791 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaa--taaatataacattgctctt 5952718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 4199382 - 4199457
Alignment:
Q  185 aaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  4199382 aaaacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 4199457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 7742233 - 7742134
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattgttctt 150  Q
    |||||||| ||||| || |  ||||||||||||| |||| | |||||||| | ||  |||||||||||| || ||||||| |||||||||||||||||||    
T  7742233 tcctcatgcatacgatagtatttttcacctttggatgtaacgcatatatatgacacattgtatttatcttttaaaaaaatataaatagaacattgttctt 7742134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 11912856 - 11912758
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||| |||||||||||| ||||||||| |||||| ||||   |||||||||| ||  |||||||||| | ||   |||| |||||||||||||||||||    
T  11912856 tccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggcactttgtatttatttttttttaaatttaaatagaacattgttctt 11912758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 13587609 - 13587686
Alignment:
Q  183 ttaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||| ||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  13587609 ttaatacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcatataatttatc 13587686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 13587928 - 13587851
Alignment:
Q  183 ttaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    |||| ||||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  13587928 ttaatacaaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 13587851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 22727598 - 22727533
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatct 120  Q
    ||||||||| |||| |||||||||| |||||||||||| |||||||||| ||  | ||||||||||    
T  22727598 tcatgtatatggtagtgattttcacttttgggtgtaccgcatatatacgtcacatagtatttatct 22727533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 22727497 - 22727458
Alignment:
Q  111 gtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  22727497 gtatttatcttttaaaaaatttaaatagaacattgttctt 22727458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 32868961 - 32868891
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  32868961 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 32868891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 32869146 - 32869076
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  32869146 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 32869076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 7088055 - 7087983
Alignment:
Q  188 acaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||||   | ||| |||||||||| |||| |||||| |||||| ||| | ||||||||    
T  7088055 acaaaaactactttctccgcggaaaccatttacgccaatgtaaactatgacctcccgtagcacataatttatc 7087983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 206588 - 206490
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||||||||| || ||||||||||||| ||| ||||| ||||||||||||| |||||    
T  206588 tcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatttatcttttacaaaatttaaatagaacattcttctt 206490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 13727498 - 13727400
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  13727498 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 13727400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 20711819 - 20711721
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  20711819 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 20711721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 21479501 - 21479599
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  21479501 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 21479599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 21183774 - 21183686
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaa 140  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |  |||||||||||| ||||||||| |||||||||    
T  21183774 tcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacgctactttgtatttatcttttaaaaaatttaaatagaa 21183686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 33774124 - 33774216
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| | |||||||| |||||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||    
T  33774124 tcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 33774216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 24711098 - 24711007
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | |||||||||| || |||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  24711098 tcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 24711007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 30832623 - 30832532
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    |||||||| |||||||| | ||||||| || ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  30832623 tcctcatgcatacggtagtcattttcatctctgggtgtaccacatatatacggcatcttgtatttattttttaaaaaatgtaaatagaacat 30832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 21280552 - 21280650
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||| |||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  21280552 tcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 21280650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 27788787 - 27788689
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||| |||| ||||    
T  27788787 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaaaattgctctt 27788689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 28075790 - 28075883
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||| | ||||||||||||||||||| | |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  28075790 tcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattg 28075883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 19737791 - 19737693
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| | |||||||| |||||||||| || ||||||||||||| | ||||||| |||||||||||||| ||||    
T  19737791 tcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatctttaaaaaaatataaatagaacattgctctt 19737693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 1155947 - 1155850
Alignment:
Q  53 cctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||||| | |||||||||| ||| |||||| |||||||| | || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  1155947 cctcatgtatacggtagtcattttcacctctggatgtaccgcatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 1155850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 2477683 - 2477587
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttc 148  Q
    ||||||||||||||||| |||||||||| ||| |||||| | |||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||    
T  2477683 tcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattgttc 2477587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 17353964 - 17354054
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||| || | |||||||| |||||||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  17353964 tcatgtatacgatagtcattttcacatttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 17354054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 34397864 - 34397962
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||| |||| || | ||||| |||||| |||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  34397864 tcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 34397962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 6159453 - 6159541
Alignment:
Q  60 tatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttc 148  Q
    ||||||||| |||||| ||||||||  |||||| |||||||||| ||  |||||||||||| ||||||||| |||||||||||||||||    
T  6159453 tatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaacattgttc 6159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 4036955 - 4037031
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaa 128  Q
    ||||||| ||||||||| |||| || |||||||||||||||| ||||||||| || ||||||||||||| |||||||    
T  4036955 tcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatttatctcttaaaaa 4037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 20611797 - 20611889
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| |||||||||||||||| |||  |  ||||||||| || ||||||||||||  ||||||||| ||| |||||||||    
T  20611797 tcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatttatcgtttaaaaaatttaagtagaacatt 20611889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 30121787 - 30121867
Alignment:
Q  70 tgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||||| |||| | |||||||| | || ||||||||||| | ||||||||| |||||| ||||||||||||    
T  30121787 tgattttcacctttggatgtatcgcatatatatgacaccttgtatttattttttaaaaaatttaaataaaacattgttctt 30121867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 27314258 - 27314179
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatc-tattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||| || ||||||| |||||||||| || |||||||||||| | ||||||||| |||||||||||||| ||||    
T  27314258 attttcacctctgagtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctctt 27314179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 235323 - 235230
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatata--cgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||| | ||||||| ||||||||||||   |||||||  || || ||| ||||||||| ||||||||| |||||||| |||||    
T  235323 ctcatgtatacggtagtcattttcatctttgggtgtacggtatatatacccggcaccttatatttatcttttaaaaaatataaatagatcattg 235230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 27994776 - 27994816
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtacc 92  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  27994776 tcctcatgtatacggtagtgattttcacctttgagtgtacc 27994816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 32631222 - 32631289
Alignment:
Q  178 agaaattaaaacaaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgt 245  Q
    |||||| ||||||| ||||||||| |||||  ||||||||| |   ||||||||||||||||||||||    
T  32631222 agaaataaaaacaataactactttttccgctttatccaatttcaaaaatttaaattatgacgtcccgt 32631289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 32696318 - 32696388
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  32696318 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 32696388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 5316695 - 5316793
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  5316695 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 5316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 23185442 - 23185540
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  23185442 tcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 23185540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 38547134 - 38547036
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| | || |||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  38547134 tcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgatctt 38547036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 27559652 - 27559745
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||    
T  27559652 tcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattg 27559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 9173121 - 9173026
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | |||||||||||||| |||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||    
T  9173121 tcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 9173026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 9181103 - 9181008
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | |||||||||||||| |||||| |||||||||| || ||| ||||||||| ||||||||| ||||||||||||||||    
T  9181103 tcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 9181008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 44655756 - 44655854
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | ||||| |||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  44655756 tcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 44655854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 45758509 - 45758607
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||||||||| ||||  ||||||||||  || |||| |||||||| ||||||||| |||||||||||||||||||    
T  45758509 tcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaatttaaatagaacattgttctt 45758607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 38853539 - 38853635
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| |||||||||||||||| | ||| ||||||||||| || ||||||||||||  ||||||||| ||||||||||| |||||||    
T  38853539 ctcatgtatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatttatcatttaaaaaatttaaatagaacactgttctt 38853635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 6771806 - 6771897
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||| ||||||||||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  6771806 tcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 6771897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 14146315 - 14146406
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | ||||||| || |||||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  14146315 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 14146406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 1366976 - 1366878
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||| ||||||||||| | ||||||| ||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  1366976 tcctcgtgtatacggtagtcattttcatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctt 1366878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 4971716 - 4971618
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| | |||||||| | |||||||||| ||||||||||  | ||||||||||||| ||||||||| |||||||||||||| ||||    
T  4971716 tcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgctctt 4971618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 5027564 - 5027662
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||| |||| | |||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  5027564 tcctcatctatatggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 5027662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 17168971 - 17169064
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    |||||||||||| |||| | ||||||||||||||||||||| |||||||||  || ||| ||||||||| ||||||||| ||||||||||||||    
T  17168971 tcctcatgtatatggtagtcattttcacctttgggtgtaccgcatatatacaacaccttatatttatcttttaaaaaatataaatagaacattg 17169064  T

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Target: chr1; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 43235868 - 43235768
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatc--tattaaaaaatgtaaatagaacattgttct 149  Q
    |||||||||||||| || ||||||||||||||||||||||  |||||||||| |||||||||||||||  ||  ||||||| ||||||||||||| ||||    
T  43235868 tcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatacgacatcttgtatttatctttaaaaaaaaatttaaatagaacatttttct 43235769  T
Q  150 t 150  Q
    |    
T  43235768 t 43235768  T

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Target: chr1; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 16140070 - 16140161
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | |||||||||| | |||||||| |||||||||  || ||||||||||||| ||||||||| ||||||||||||    
T  16140070 tcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaacaccttgtatttatcttttaaaaaatataaatagaacat 16140161  T

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Target: chr1; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 26803965 - 26804058
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||| |||||||||||||   ||||| | |||||||||| |||||||||||||||| ||||||||| |||||| | ||||||||||    
T  26803965 ctcatgtatacggtagtgattttcacctt---gtgtatcgcatatatacgacatcttgtatttatcttttaaaaaatttaaatatagcattgttctt 26804058  T

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Target: chr1; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 50881445 - 50881543
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||| | |||||||||| | | |||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  50881445 tcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 50881543  T

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Target: chr1; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 19955732 - 19955825
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||| ||||||||| | ||||||||||||||||||||| ||||||||||  | ||| ||||||||| ||||||||| |||||||| |||||    
T  19955732 tcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagatcattg 19955825  T

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Target: chr1; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 40501885 - 40501796
Alignment:
Q  55 tcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    |||||||||||||| | ||||| ||||||||||||||| |||||||||| || ||| ||||||||| ||||||||| |||||||| ||||    
T  40501885 tcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagatcatt 40501796  T

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Target: chr1; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 51607538 - 51607445
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatac-gccatcttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||||||| | |||||||| |||||||||||| ||||||||| |||| ||| ||||||||| ||||||||| |||||| ||||||    
T  51607538 tcctcatgtatacggtagtcattttcacgtttgggtgtaccgcatatatacggccaccttatatttatcttttaaaaaatataaataaaacatt 51607445  T

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Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 3406433 - 3406524
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | ||||||||||  | ||||||  |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  3406433 tcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 3406524  T

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Target: chr1; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 3440387 - 3440296
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | ||||||||||  | ||||||  |||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  3440387 tcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 3440296  T

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Target: chr1; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 5533327 - 5533426
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt-aaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| |||||||||||||||  |||||  |||||||||| || ||||| ||||||| || ||||||| ||||||||| |||||||||    
T  5533327 tcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaatttaaatagaatattgttctt 5533426  T

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Target: chr1; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 39134821 - 39134722
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatc-tattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||||||||| ||| ||||| |||||||||||||||   |||||||||  || |||||||||||| | ||||||||| |||||||||||||||||||    
T  39134821 tcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatttatctttttaaaaaatttaaatagaacattgttctt 39134722  T

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Target: chr1; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 50146311 - 50146409
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||| ||||||| |||||||||| || |||||||| ||| || |||| |||||||| | ||||| | |||||||||||||||||||    
T  50146311 tcctcatgtatagggtaatgatttttacctttgggtctatcacatatacacggcaccttgcatttatctttcaaaaagtttaaatagaacattgttctt 50146409  T

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Target: chr1; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 21741029 - 21740937
Alignment:
Q  58 tgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||| |||| | |||||||||| |||||||| | |||||||||| || ||||||||||||| |||||||||  ||||||||||||| ||||    
T  21741029 tgtatatggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatacaaatagaacattgctctt 21740937  T

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Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 22865538 - 22865461
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||||||||||  |||||||   |||||||||||||||| ||||||||| |||||||||||||| ||||    
T  22865538 attttcacctttgggtgtaccg-atatatagagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 22865461  T

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Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 33170776 - 33170869
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||| ||||||||||| || |||||||| |||||||||  ||  |||||||||  | ||||||||| |||||| |||||||||    
T  33170776 ctcatgtatacggtagtgattttcaccatttggtgtaccgcatatatacaacacattgtatttacgttttaaaaaatttaaatataacattgtt 33170869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 35392295 - 35392382
Alignment:
Q  62 tacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||||||||||||||| | |||| |||||||||| || ||||||||||||  ||||||||| |||||| |||||| |||||    
T  35392295 tacggtagtgattttcacctttggatataccgcatatatacggcaccttgtatttatc-cttaaaaaatttaaataaaacattattctt 35392382  T

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Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 44895667 - 44895756
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||||||||||||| | |||||||||||||||||||||||       ||||| ||| ||||||||| ||||||||| |||||||| |||||||    
T  44895667 tcctcatgtatacggtaatcattttcacctttgggtgtaccac------ccgccaccttatatttatcttttaaaaaatataaatagatcattgtt 44895756  T

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Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 41697235 - 41697144
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacat 143  Q
    ||||||||||||||||| | |||||||| | ||| |||||  ||||||||||  |  |||||||||||| ||||||||| ||||||||||||    
T  41697235 tcctcatgtatacggtagtcattttcacttctggatgtactgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacat 41697144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 6221693 - 6221790
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    ||||||| |||||| || |||||||||| ||| | |||||| | |||||||| ||  |||||||||||| || |||||| |||||||||||||||||||    
T  6221693 tcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatttatct-tttaaaaatttaaatagaacattgttctt 6221790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 6889646 - 6889724
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||| ||| |||||| ||||||||||  |  |||||||||||| ||||||||| |||||||||||||| ||||    
T  6889646 attttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctctt 6889724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 6891492 - 6891570
Alignment:
Q  72 attttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||| ||| |||||| ||||||||||  |  |||||||||||| ||||||||| |||||||||||||| ||||    
T  6891492 attttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctctt 6891570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 13913578 - 13913485
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatata--cgccatcttgtatttatctattaaaaaatgtaaatagaacattg 145  Q
    ||||||||||||||| | |||||||| ||| |||||||| ||||||||  || || ||| ||||||||| ||||||||| |||||||| |||||    
T  13913578 ctcatgtatacggtagtcattttcacttttaggtgtaccgcatatatacccggcaacttatatttatcttttaaaaaatataaatagatcattg 13913485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 10926052 - 10925953
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaa-atgtaaatagaacattgttctt 150  Q
    ||||||||||||||||| ||||||||| |||||| || | | |||||||||| ||  |||||||||| | ||||||| |  ||||||||| |||||||||    
T  10926052 tcctcatgtatacggtagtgattttcatctttggatgcatctcatatatacggcacattgtatttattttttaaaaatacttaaatagaatattgttctt 10925953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 17322684 - 17322623
Alignment:
Q  89 taccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||| ||||||||||| |  |||||||||||| | ||||||| |||||||||||||||||||    
T  17322684 taccgcatatatacgctacattgtatttatctttaaaaaaatataaatagaacattgttctt 17322623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 48344551 - 48344621
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  48344551 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 48344621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 48350494 - 48350424
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  48350494 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 48350424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 24092 - 23994
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||| ||| |||||||| |||||||||| |||||||||||| |||||||||| || ||||||||||||| ||||||||| ||||||||| |||||||||    
T  24092 tccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattgttctt 23994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 38929 - 39024
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgtt 147  Q
    ||||||| ||||||||| |||||||||| |||| ||||| | |||||||||| || ||||||||||||| ||||||||| ||||||||||||||||    
T  38929 tcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgtt 39024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 1347 - 1437
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaaca 142  Q
    ||||||||||||||||| | ||||||| || |||||||||| |||||||||| || ||||||||||||| ||||||||| |||||||||||    
T  1347 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcagcttgtatttatcttttaaaaaatataaatagaaca 1437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 173609 - 173515
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgt 146  Q
    |||||| |||||||||| ||||||| ||||||||||||| | ||||||||||  | ||||||||||||| ||||||||| |||||||||||||||    
T  173609 tcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatttatcttttaaaaaatttaaatagaacattgt 173515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 230958 - 230860
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |||| |||||||||||||||||| || | |||||||||  || |||  |||||||| |||| |||| |||||||||||||||||||    
T  230958 tcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatacaacaccttaaatttatcttttaacaaatttaaatagaacattgttctt 230860  T

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Target: scaffold0022 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 40091 - 40189
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt--aaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |  ||||||||||||| |||||||| ||||| ||||| || ||||||||||||| ||  ||||||  |||||||||||||||||||    
T  40091 ctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgttctt 40189  T

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Target: scaffold0022; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 138151 - 138249
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctatt--aaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||| |  ||||||||||||| |||||||| ||||| ||||| || ||||||||||||| ||  ||||||  |||||||||||||||||||    
T  138151 ctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgttctt 138249  T

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Target: scaffold1320 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 1358 - 1456
Alignment:
Q  52 tcctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaaaaaatgtaaatagaacattgttctt 150  Q
    |||||||||||||| || |||||||||| ||||||||||   |||||||||  || ||| ||||||||| ||||||| | ||||||||||||| |||||    
T  1358 tcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacattattctt 1456  T

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Target: scaffold0227 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 16033 - 16095
Alignment:
Q  54 ctcatgtatacggtactgattttcacctttgggtgtaccacatatatacgccatcttgtattt 116  Q
    ||||||||||||||| ||||||||| |||||| |||||| |||| ||||| ||||||||||||    
T  16033 ctcatgtatacggtagtgattttcatctttggatgtaccgcatacatacgacatcttgtattt 16095  T

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Target: scaffold0227; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 16125 - 16161
Alignment:
Q  108 cttgtatttatctattaaaaaatgtaaatagaacatt 144  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  16125 cttgtatttatcttttaaaaaatttaaatagaacatt 16161  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 351414 - 351360
Alignment:
Q  71 gattttcacctttgggtgtaccacatatatacgccatcttgtatttatctattaa 125  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||||||| ||||    
T  351414 gattttcacctttgggtgtacaacatatatacgacaccttgtatttatcttttaa 351360  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 55610 - 55680
Alignment:
Q  190 aaaaactactttctccgccctatccaattacgccaatttaaattatgacgtcccgtggcagaaaatttatc 260  Q
    ||||||||||||||||||   | |||||||||||||| |||| |||||| |||||| ||| | ||||||||    
T  55610 aaaaactactttctccgcggaaaccaattacgccaatgtaaactatgacctcccgtagcacataatttatc 55680  T

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