View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_high_17 (Length: 294)
Name: NF12239_high_17
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 31069299 - 31069030
Alignment:
| Q |
9 |
gagaagcagagaggagaattgcaggaaaccaattcatatgagtcaaacgtatgcttttagtttatttttcagtctcctctnnnnnnntatattagttttt |
108 |
Q |
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| T |
31069299 |
gagaagctgagaggagaattgcaggaaaccaattcatgtgagtcaaacgtatgcttttagtttatttttcagtctcctctaaaaaaatatattagttttt |
31069200 |
T |
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| Q |
109 |
agacataaatttttatttacnnnnnnnggctaatgataacattgattttgagatatctgttatagatttgaaaatactaattaatttaatagtaatacgg |
208 |
Q |
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| T |
31069199 |
agacataaatttttatttactttttttggctaatgataacattgattttgagatatctgttatagatttgaaaatactaattaatttaatagtaatacgg |
31069100 |
T |
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| Q |
209 |
gaatataaaagtatgagaccctattttatgctgtatttttgttaaataatactgtttaatttagtttatg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31069099 |
gaatataaaagtatgagaccctattttatgctgtatttttgttaaataatactgtttaatttagtttatg |
31069030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 31077766 - 31077720
Alignment:
| Q |
9 |
gagaagcagagaggagaattgcaggaaaccaattcatatgagtcaaa |
55 |
Q |
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||||||||||||| || || ||||||||||||||||| ||||||||| |
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| T |
31077766 |
gagaagcagagagaaggatcgcaggaaaccaattcatgtgagtcaaa |
31077720 |
T |
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