View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_high_20 (Length: 266)
Name: NF12239_high_20
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 27945342 - 27945103
Alignment:
| Q |
17 |
aataataattacaattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcagcaatttggttgtcatcaaccgaaatag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
27945342 |
aataataattacaattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcggcgatttggttgtcatcaaccgaaatag |
27945243 |
T |
|
| Q |
117 |
aactgaaatttgccgccaccgatcgtgccgtgtttgtcttgtaataagtatagtcctccactcgcatcaacccaccagatttttgaatgtactcgtgatc |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
27945242 |
aactgaaatttgccgccaccgatcgtgcagtgtttgtcttataataagtatagtcctccactcgcatcagcccaccatatttttgaatgtactcgtgatc |
27945143 |
T |
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| Q |
217 |
acagtcaacatgttgttgctcgctaagactcacaggttct |
256 |
Q |
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| T |
27945142 |
acagtcaacatgatgttgctcgctaagactcacaagttct |
27945103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 27436850 - 27436611
Alignment:
| Q |
17 |
aataataattacaattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcagcaatttggttgtcatcaaccgaaatag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
27436850 |
aataataattacaattcaaattgtttagagtattactgaccagcaagaggtccatgtttaacgagattggcggtgatttggttgtcatcaaccgaaatag |
27436751 |
T |
|
| Q |
117 |
aactgaaatttgccgccaccgatcgtgccgtgtttgtcttgtaataagtatagtcctccactcgcatcaacccaccagatttttgaatgtactcgtgatc |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
27436750 |
aactgaaatttgccgccaccgatcgtgcagtgtttgtcttataataagtatagtcctccactcgcatcagcccaccatatttttgaatgtactcgtgatc |
27436651 |
T |
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| Q |
217 |
acagtcaacatgttgttgctcgctaagactcacaggttct |
256 |
Q |
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| T |
27436650 |
acagtcaacatgatgttgctcgctaagactcacaagttct |
27436611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 27549400 - 27549605
Alignment:
| Q |
41 |
ttagagtattactgaccagcaagaggtccatgtttaacgagattggcagcaatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgatc |
140 |
Q |
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|||| |||||||| ||||||||||||||||| ||| | ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |
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| T |
27549400 |
ttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgatc |
27549499 |
T |
|
| Q |
141 |
gtgccgtgtttgtcttgtaataagtatagtcctccactcgcatcaacccaccagatttttgaatgtactcgtgatcacagtcaacatgttgttgctcgct |
240 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||| |||||||| |||||||||||||| || || |
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| T |
27549500 |
gtgcaatgtttgtcttgtaataagtatagtcttccactcgcatgagaccaccagattttttaatgtactcatgatcacaatcaacatgttgttgatcact |
27549599 |
T |
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| Q |
241 |
aagact |
246 |
Q |
| |
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|||||| |
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|
| T |
27549600 |
aagact |
27549605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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