View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12239_high_8 (Length: 372)
Name: NF12239_high_8
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 29658991 - 29658638
Alignment:
| Q |
6 |
agaagaaactaagtgtggtagagtatttaaaattgctgtaaatggaaaacttttcatcttctaatgaaatggaatgtgacaagcaagatgatgtagtagt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29658991 |
agaagaaactaagtgtggtagagtatttaaaattgctgtaaatggaaaacttttcatcttctaatgaaatggagtgtgacaagcaagatgatgtagtagt |
29658892 |
T |
|
| Q |
106 |
attacattacctaataatatatgcattagttttataaattaaaaacaaaatgtccaaattaacttaatttcttgaacctccaaaagtgttcccaacgttc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29658891 |
attacattacctaataatatatgcattagttttataaattaaaaacaaaatgtccaaattaacttaatttcttgaacctccaaaagtgttcccaacattc |
29658792 |
T |
|
| Q |
206 |
ctaaattagtatgaggacttcaaaaatagaattaactcgtgccgtttggtaatctaaaagtgcttttagacaataaaaaatacatgtagaattataaaca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29658791 |
ctaaattagtatgaggacttcaaaaatagaactaactcgtgccgtttggtaatctaaaagtgcttttagacaata-aaaatacatgtagaattataaaca |
29658693 |
T |
|
| Q |
306 |
aatttata---aactcttgaaagccatatctaatctaatgtaatcacgcaacaca |
357 |
Q |
| |
|
|||||||| |||||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
29658692 |
aatttataaacaactcttggaagtcacatctaatctaatgtaatcacgcaacaca |
29658638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University