View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12239_low_1 (Length: 1273)

Name: NF12239_low_1
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12239_low_1
NF12239_low_1
[»] chr3 (35 HSPs)
chr3 (28-564)||(18164016-18164547)
chr3 (28-252)||(19380063-19380287)
chr3 (28-252)||(19333158-19333382)
chr3 (28-252)||(19413360-19413584)
chr3 (28-252)||(19460693-19460917)
chr3 (40-254)||(19374853-19375067)
chr3 (29-252)||(19354025-19354244)
chr3 (39-252)||(18115126-18115339)
chr3 (29-248)||(19350595-19350814)
chr3 (40-252)||(19398905-19399117)
chr3 (28-252)||(19436062-19436286)
chr3 (39-252)||(17940926-17941139)
chr3 (28-252)||(18143465-18143686)
chr3 (28-236)||(18102640-18102848)
chr3 (44-252)||(25462235-25462440)
chr3 (39-291)||(24494023-24494279)
chr3 (28-252)||(18107610-18107834)
chr3 (39-252)||(18146018-18146225)
chr3 (67-252)||(18022039-18022224)
chr3 (39-228)||(19392343-19392532)
chr3 (28-171)||(18015339-18015482)
chr3 (28-252)||(14896984-14897205)
chr3 (28-252)||(19419153-19419377)
chr3 (113-255)||(17728380-17728525)
chr3 (113-255)||(19029609-19029754)
chr3 (143-248)||(18015235-18015340)
chr3 (156-252)||(16653225-16653321)
chr3 (661-757)||(18163412-18163508)
chr3 (156-252)||(19012120-19012216)
chr3 (28-237)||(16676380-16676592)
chr3 (123-252)||(19423765-19423897)
chr3 (778-831)||(30731806-30731859)
chr3 (1192-1266)||(18163256-18163326)
chr3 (300-431)||(17940706-17940840)
chr3 (1069-1125)||(18163341-18163402)
[»] chr7 (8 HSPs)
chr7 (901-1065)||(4277279-4277445)
chr7 (937-1065)||(25862592-25862720)
chr7 (778-831)||(4277515-4277568)
chr7 (778-831)||(15483957-15484010)
chr7 (984-1026)||(32025272-32025314)
chr7 (980-1026)||(32033791-32033837)
chr7 (958-1021)||(38836142-38836205)
chr7 (958-1021)||(49094549-49094612)
[»] scaffold2156 (2 HSPs)
scaffold2156 (40-435)||(536-913)
scaffold2156 (479-537)||(959-1016)
[»] scaffold0640 (2 HSPs)
scaffold0640 (40-435)||(4417-4794)
scaffold0640 (479-537)||(4314-4371)
[»] chr6 (4 HSPs)
chr6 (906-1065)||(31934682-31934842)
chr6 (28-196)||(13667495-13667663)
chr6 (954-1026)||(10501971-10502043)
chr6 (779-831)||(31934909-31934961)
[»] chr4 (5 HSPs)
chr4 (39-252)||(15531545-15531758)
chr4 (954-1026)||(16595094-16595166)
chr4 (958-1021)||(3958949-3959012)
chr4 (958-1021)||(2048987-2049050)
chr4 (958-1021)||(39735816-39735879)
[»] chr8 (3 HSPs)
chr8 (30-252)||(8458667-8458889)
chr8 (952-1026)||(4922771-4922845)
chr8 (958-1015)||(6596525-6596582)
[»] chr1 (6 HSPs)
chr1 (937-1065)||(18187877-18188006)
chr1 (952-1022)||(42080689-42080759)
chr1 (479-564)||(41407113-41407201)
chr1 (952-1044)||(40632826-40632918)
chr1 (952-1026)||(9057921-9057995)
chr1 (958-1015)||(43403898-43403955)
[»] chr2 (9 HSPs)
chr2 (957-1026)||(30426132-30426201)
chr2 (957-1024)||(32229983-32230050)
chr2 (778-831)||(27147119-27147172)
chr2 (778-830)||(44176723-44176774)
chr2 (958-1015)||(21949901-21949958)
chr2 (958-1015)||(9446975-9447032)
chr2 (958-1015)||(31320256-31320313)
chr2 (958-1015)||(40275144-40275201)
chr2 (958-1003)||(41411526-41411571)
[»] chr5 (3 HSPs)
chr5 (980-1026)||(27584694-27584740)
chr5 (779-831)||(9383287-9383339)
chr5 (958-1015)||(31610044-31610101)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 28 - 564
Target Start/End: Complemental strand, 18164547 - 18164016
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||||||| |||||||||||||  |||||||||| ||||| |||||||| ||||| |||  ||||  ||||| | |||| || ||| | || ||||||    
T  18164547 gttgtcgcagtggactccttcccatacacaacaatctttttcggttgaccacgttgatatccgaccaaaactatcattgatgccgtgtctgaacgttaac 18164448  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    ||||||||||||||||| ||||||||||||      ||||||||||||||||||||||||| ||||  |||||   ||||||| | |||||||| || ||    
T  18164447 aatgtctctcgatctttttcattgcatcgagtg---gtgtgattgctgcacatgcttttgtcgaatcgggttacatataaaagaagaagcaaaataaatg 18164351  T
Q  228 acatatgtgtagtaagaatggtcatgagctttatttggattagagaggaagatgtaattcaaatatgagtctgattcttgtgtgattatatgtataagat 327  Q
    |||| | || ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18164350 acatttttggagtaagaatggtcatgagcgttgtttggatcagagaggaagatgtaattcaaatatgagtctgattcttgtgtgattatatgtgtaagat 18164251  T
Q  328 ttttcttttgatattatgtataagaagatgttgttaaataatgggaaagcatgaaaaatgaaatagctcaaaacaagatgacttttaaaaagtaggagaa 427  Q
    |||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18164250 ttttcttttgatgttatgcatatgaagatgttgttagataatgggaaagcatgaaaaatgaaatagctcaaaacaagatgacttttaaaaagtaggtgaa 18164151  T
Q  428 gactttgacttttgaagtac---agtttgatctatttgacatggcaaatatatcttcaaacaagaagatttaattggaaaagtagagaagcctttgaaat 524  Q
    |||||||| |||||||||||   |||||||| ||||||  || ||    ||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  18164150 gactttgaattttgaagtacagtagtttgatttatttgttattgc----atatcttcaaacaagaagacttaattggaaaagtagggaagactttgaaat 18164055  T
Q  525 tatcttgaacttaatatacatattaattttagctatagtc 564  Q
    ||| |||||||||||||||||||||| |||||||||||||    
T  18164054 tattttgaacttaatatacatattaa-tttagctatagtc 18164016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 9e-64
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 19380287 - 19380063
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||     
T  19380287 gttgtcacagtggacacctttccaagcacaacaatcattttcagttgaccacgttgaaatcgtaccaagactatcattgattccctgtttaaaggttaag 19380188  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    | | ||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||| || | || || ||| |||| |||||    
T  19380187 agtatctctagatctttctcattacatcgaaccactgtgtgattgctgcatatgcatttgtggaatgtggttatagaaagaaatagaagtaaaataagtg 19380088  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    |||| |||||||||||||| |||||    
T  19380087 acatttgtgtagtaagaattgtcat 19380063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 19333382 - 19333158
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    ||||||||||||||||||||||||  | |||||||| |||||||||||||| ||||| |||  |||| |||||| |  ||| |||||| | || ||||||    
T  19333382 gttgtcgcagcggactccttcccatacgcaacaatctttttcagttgaccacgttgatatccgaccaagactatcatggatgccctgtctgaacgttaac 19333283  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||| |||||| ||||| ||||||||| |||||||||||||||    
T  19333282 aatgtctctcgatctttctcattgcagcgaacaactgtgtgattgctacacatggttttgtggaatgtagttatagataaaagtgtaagcaaaagaagtg 19333183  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    | || ||||||||||||||||||||    
T  19333182 aaatttgtgtagtaagaatggtcat 19333158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 19413584 - 19413360
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||| |||  |||| |||||| | |||| ||||| || |||||||||    
T  19413584 gttgtcgcagtggactccttcccaaccacaacaatctttttcggttgaccacgttgatatccaaccaagactatcagtgataccctggttgaaggttaac 19413485  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    | |||||||||||| ||||||||||||||||| |||||| ||||| |||||||| |||||| |||| |||||||||||||||||| ||||||||||||||    
T  19413484 agtgtctctcgatcattctcattgcatcgaacaactgtgggattgttgcacatggttttgtggaatatggttattgataaaagtagaagcaaaagaagtg 19413385  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    |||| |||| || ||||||||||||    
T  19413384 acatttgtgaaggaagaatggtcat 19413360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 19460917 - 19460693
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| |||||||||||||||||||||||||  |||| |||||||| ||| | |||  |||| || | | | ||||||| | ||| ||||||||     
T  19460917 gttgtcacagtggactccttcccaagcacaacaatctatttcggttgaccatgttaatatccgaccaagagtgtcattgattccttatttgaaggttaag 19460818  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  19460817 agtgtctctcgatctttctcattgcatccaaccactgtgtgattgctgcacaagcttttgtagaatgtggttatagataaaagtaaaagcaaaagaagtg 19460718  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    | || ||||||||||||||||||||    
T  19460717 aaatttgtgtagtaagaatggtcat 19460693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 4e-60
Query Start/End: Original strand, 40 - 254
Target Start/End: Complemental strand, 19375067 - 19374853
Alignment:
Q  40 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 139  Q
    |||||||||||||| ||||||||| |||||| | ||||| | ||||||| |||||  ||||| | ||||||||| ||| |||||||| | ||||||||||    
T  19375067 gactccttcccaagaacaacaatctttttcaatcgaccacgatgaaatcataccaaaactatcattgattccctctttgaaggttaatagtgtctctcga 19374968  T
Q  140 tctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtag 239  Q
    |||||||||||||||||||||| |||||||||||||||||   |||||| |||||||||||| |||||||||||||||||||||||||| || |||||||    
T  19374967 tctttctcattgcatcgaaccaatgtgtgattgctgcacaccgttttgtggaatgtggttatagataaaagtataagcaaaagaagtgaaatttgtgtag 19374868  T
Q  240 taagaatggtcatga 254  Q
    ||| |||||||||||    
T  19374867 taaaaatggtcatga 19374853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 19354244 - 19354025
Alignment:
Q  29 ttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaaca 128  Q
    ||||| ||| ||||| ||||||||| ||||||||| |||||||| |||||  |||||||| ||||| |||||| | ||||||||||||||||||||||||    
T  19354244 ttgtcacagtggacttcttcccaagaacaacaatctttttcagtcgaccacattgaaatcataccaagactatcattgattccctgtttaaaggttaaca 19354145  T
Q  129 atgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtga 228  Q
    |||||||||||||||||||||||||||||||||  ||||||||| ||||||    ||||| |||||||||||| ||||||| || || ||||||||||||    
T  19354144 atgtctctcgatctttctcattgcatcgaaccatagtgtgattgttgcaca----tttgtggaatgtggttatagataaaaatagaaacaaaagaagtga 19354049  T
Q  229 catatgtgtagtaagaatggtcat 252  Q
     || |||||||||||||| |||||    
T  19354048 aatttgtgtagtaagaattgtcat 19354025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 18115339 - 18115126
Alignment:
Q  39 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 138  Q
    |||||||||||||||||||||||||  |||| |||||||| ||| | |||  |||| || | | | ||||||| | ||| |||||||| | |||||||||    
T  18115339 ggactccttcccaagcacaacaatctatttcggttgaccacgttaatatccgaccaagagtgtcattgattccttttttgaaggttaagagtgtctctcg 18115240  T
Q  139 atctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgta 238  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||||    
T  18115239 atctttctcattgcatccaaccactgtgtgattgctgcacgagcttttgtagaatgtggttatagataaaagtaaaagcaaaagaagtgaaatttgtgta 18115140  T
Q  239 gtaagaatggtcat 252  Q
    ||||||||||||||    
T  18115139 gtaagaatggtcat 18115126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 19350814 - 19350595
Alignment:
Q  29 ttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaaca 128  Q
    ||||||||| ||||||| |||||  |||||| ||| |||||| ||||||| ||||| |||  ||||  | ||| | |||| || ||||||||||||||||    
T  19350814 ttgtcgcagtggactccgtcccatacacaactatctttttcaattgaccatgttgatatccaaccaaaattatcattgatgccatgtttaaaggttaaca 19350715  T
Q  129 atgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtga 228  Q
    ||||||||| |||||||||||||||| |||||| |||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  19350714 atgtctctctatctttctcattgcattgaaccaatgtgtgattggtgcacatggttttgtggaatgtggttatagataaaagtataagcaaaagaagtga 19350615  T
Q  229 catatgtgtagtaagaatgg 248  Q
     || ||||||||||||||||    
T  19350614 gatttgtgtagtaagaatgg 19350595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 19399117 - 19398905
Alignment:
Q  40 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 139  Q
    ||||||||||||||| |||||||| ||||  |||||||| ||||| |||  |||| |||||| | |||| || ||||| ||| |||||| ||||||||||    
T  19399117 gactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctctcga 19399018  T
Q  140 tctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtag 239  Q
    |||||||||||||||||||| |||||||||||| | |||||| |||||| |||| | ||||| |||||||||||||||||||||||||| || |||||||    
T  19399017 tctttctcattgcatcgaacaactgtgtgattggtacacatggttttgtggaatatagttatagataaaagtataagcaaaagaagtgaaatttgtgtag 19398918  T
Q  240 taagaatggtcat 252  Q
    |||||||||||||    
T  19398917 taagaatggtcat 19398905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 19436286 - 19436062
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| |||| |||  ||||||||||||||| ||||| |||||||| ||||| |||  ||||  ||||| | |||| || ||||| |||||||||    
T  19436286 gttgtcacagtggacacctctccaagcacaacaatctttttcggttgaccacgttgatatccgaccaaaactatcattgatgccttgtttgaaggttaac 19436187  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||| ||||||||  ||||    
T  19436186 agtgtctcttgatctttctcattgcatcgaaccactgtgtgattgctgcacatggttttgtggaatgttgttatagataaaagtagaagcaaaaagagtg 19436087  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    |||| |||| |||||||||||||||    
T  19436086 acatttgtgaagtaagaatggtcat 19436062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 17941139 - 17940926
Alignment:
Q  39 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 138  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| ||   |||| |||||| | |||| || ||||| |||||||| | |||||| ||    
T  17941139 ggactccttcccaagcacaacaatcatttttggttgaccacgttgatattcgaccaagactatcattgatgccatgtttgaaggttaatagtgtctcgcg 17941040  T
Q  139 atctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgta 238  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||  ||||||||| |||||||| ||| ||||| |||| |    
T  17941039 atctttctcattgcattgaacaactgtgtgattgctgcacatggttttgtggaatgtggttataaataaaagtagaagcaaaaaaagggacatttgtgaa 17940940  T
Q  239 gtaagaatggtcat 252  Q
    ||||||||||||||    
T  17940939 gtaagaatggtcat 17940926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 18143686 - 18143465
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    ||||||||||  ||||||||||||  | |||||||  |||||||||||||| ||||| ||   |||| |||||| | |||| |||  ||| ||| |||||    
T  18143686 gttgtcgcagtagactccttcccatacgcaacaatttttttcagttgaccatgttgatatttgaccaagactatcattgatgccccatttgaagcttaac 18143587  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    |||||||||| ||||||||| |||||||||||   ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  18143586 aatgtctctcaatctttctcgttgcatcgaac---tgtgtgattgctgcacatggttttgtggaatgtggttattgatagaagtataagcaaaagaagtg 18143490  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    |||| |||| |||||||||||||||    
T  18143489 acatttgtgaagtaagaatggtcat 18143465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 18102848 - 18102640
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| |||||||||||||||||||| |||| ||||  |||||||| |||||||||  ||||  ||||| | |||| || ||||| |||||||||    
T  18102848 gttgtcacagtggactccttcccaagcacaaaaatcttttttggttgaccacgttgaaatccgaccaaaactatcattgatgccatgtttgaaggttaac 18102749  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    | ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||| ||| ||||||||||    
T  18102748 agtgtctcatgatctttctcattgcatcgaaccactgtgtgattggtgcacatgcttttgtggaatgtggttaccgataaaagtagaagtaaaagaagtg 18102649  T
Q  228 acatatgtg 236  Q
     ||| ||||    
T  18102648 gcatttgtg 18102640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 44 - 252
Target Start/End: Complemental strand, 25462440 - 25462235
Alignment:
Q  44 ccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcgatctt 143  Q
    |||||||| ||||||||||| |||||||   ||||  |||||||| ||||| |||| | | |||| || ||||| |||||||||| |||||| || ||||    
T  25462440 ccttcccatgcacaacaatctttttcag---accacattgaaatcataccaagactgtcattgatgccatgtttgaaggttaacagtgtctcacggtctt 25462344  T
Q  144 tctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtagtaag 243  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||| ||||||| ||| ||||  |||||||| |||||||||||    
T  25462343 tctcattgcatcgaaccacagtgtgattgttgcacatgcttttgtggaacgtggttattgaaaaaagtagaagtaaaattagtgacatttgtgtagtaag 25462244  T
Q  244 aatggtcat 252  Q
    |||||||||    
T  25462243 aatggtcat 25462235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 39 - 291
Target Start/End: Original strand, 24494023 - 24494279
Alignment:
Q  39 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 138  Q
    ||||||||| ||| ||||||||||| ||| | |||||||| |||||||||  |||| |||||| |  ||| |  ||||| |||| ||||| |||||||||    
T  24494023 ggactcctttccatgcacaacaatcttttacggttgaccatgttgaaatcagaccaagactatcatcgatgctttgtttgaaggctaacagtgtctctcg 24494122  T
Q  139 atctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgta 238  Q
    ||||||||||||||||  ||||| |||||||| |||||||||||| |||| |||||||||||| |||||||||| |||||||||||||| ||  || | |    
T  24494123 atctttctcattgcatgaaaccaatgtgtgatggctgcacatgctcttgtggaatgtggttatggataaaagtagaagcaaaagaagtggcaattgcgaa 24494222  T
Q  239 gtaagaatggtcat----gagctttatttggattagagaggaagatgtaattcaaat 291  Q
    ||||||||||||||     |   |||||||||||||| | |||||||||||||||||    
T  24494223 gtaagaatggtcatcatgaatgattatttggattagaaaagaagatgtaattcaaat 24494279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 18107834 - 18107610
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| ||||| |||||||  |||||||||| ||||| ||||||||  |||||| | | | | |||||| | |||| || ||||| ||||||||     
T  18107834 gttgtcacagtggacttcttcccatacacaacaatctttttcggttgaccaccttgaaaacatgctaagactattattgatgccatgtttgaaggttaag 18107735  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    | | | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | || || ||| |||| |||||    
T  18107734 agtatatctagatctttctcattgcatcgaaccactgtgtgattgctgcacatgcatttgtggaatgtggttatagaaagaaatagaagtaaaataagtg 18107635  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    |||| |||||||||||||| |||||    
T  18107634 acatttgtgtagtaagaattgtcat 18107610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 18146225 - 18146018
Alignment:
Q  39 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 138  Q
    ||||||||| |||| |||||||||| |||||||||||||| |||||||||  ||||  ||||| | |||| |||| ||| |||||| ||| ||||||  |    
T  18146225 ggactcctttccaaacacaacaatctttttcagttgaccacgttgaaatccgaccaaaactatcattgatgccctttttgaaggttgacagtgtctcatg 18146126  T
Q  139 atctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgta 238  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||| ||||||||||||      || |||||||||||||| ||| || |||| |    
T  18146125 atctttctcattgcatcgaaaaattgtgtgattgctgcacatgcttttgtggaatgtggttat------aaatataagcaaaagaaatgatatttgtgaa 18146032  T
Q  239 gtaagaatggtcat 252  Q
    |||||||| |||||    
T  18146031 gtaagaatagtcat 18146018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 67 - 252
Target Start/End: Complemental strand, 18022224 - 18022039
Alignment:
Q  67 ttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcgatctttctcattgcatcgaaccactgtg 166  Q
    ||||||||||||  |||| |||  || | |||||| | |||||||  |||||||| |||| | ||||||||||||||| ||||||||| | |||||||||    
T  18022224 ttcagttgaccactttgatatccgactaagactatcattgattccacgtttaaagtttaagagtgtctctcgatctttttcattgcattgcaccactgtg 18022125  T
Q  167 tgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtagtaagaatggtcat 252  Q
    | ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| || | || |||||||||| ||||    
T  18022124 taattgctgcacatggttttgtggaatgtggttattgataaaagtagaagcaaaagaagtgaaatttttgaagtaagaatgatcat 18022039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 19392532 - 19392343
Alignment:
Q  39 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 138  Q
    |||| |||||||||||||||||||| ||||  |||| |||  |||| |||  |||| || ||||| |||| || ||||| |||||||||| |||||||||    
T  19392532 ggacaccttcccaagcacaacaatctttttttgttgtccacattgatatccgaccaagattataattgatgccttgtttgaaggttaacagtgtctctcg 19392433  T
Q  139 atctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtga 228  Q
    |||||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||| ||||  ||||||||| | |||||||||||||    
T  19392432 atctttctcattacattgaaccacggtgtgattgatgcacatgcttttgtataatgtgattataaataaaagtagatgcaaaagaagtga 19392343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 18015482 - 18015339
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| ||||||||||||||| ||||||||| ||||| || ||||| ||||||||| |||||  ||||| | ||||||| ||||| |||||||||    
T  18015482 gttgtcacagtggactccttcccaagaacaacaatctttttctgtcgaccacgttgaaatcataccaaaactatcattgattccttgtttgaaggttaac 18015383  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgatt 171  Q
    | |||||||||||||||||||||||||||||||| |||||||||    
T  18015382 agtgtctctcgatctttctcattgcatcgaaccaatgtgtgatt 18015339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 14896984 - 14897205
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |   ||||  |||| |||  ||||  | ||| |  ||| || ||||| ||| |||||    
T  14896984 gttgtcgcagtggactccttcccaagcacaacaatctttttcgg---accatattgatatccgaccaaaagtatcatggatgccttgtttgaagtttaac 14897080  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    ||| |||| |||||||||||||||||| ||||||| ||||| |||||||||||| |||||| |||||| ||||| |||||||| |||| ||||| |||||    
T  14897081 aatatctcacgatctttctcattgcattgaaccacggtgtggttgctgcacatggttttgtggaatgtagttatagataaaagcataaacaaaaaaagtg 14897180  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
     ||| |||| |||||||||||||||    
T  14897181 tcatttgtgaagtaagaatggtcat 14897205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 19419377 - 19419153
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| |||||||||||||  |||||||||| ||||| | ||||||  |||||| |   | | |||||| | |||| |||||||| ||||||||     
T  19419377 gttgtcacagtggactccttcccatacacaacaatctttttctgctgaccaccttgaaaacaggctaagactattattgatgccctgtttgaaggttaag 19419278  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtg 227  Q
    | | ||||| |||||||||||||||||||||||| ||||||||  |||||||||| | ||  |||||||||||| || |||| || ||| |||| |||||    
T  19419277 agtatctctagatctttctcattgcatcgaaccattgtgtgatatctgcacatgcatatgcggaatgtggttatagaaaaaaatagaagtaaaataagtg 19419178  T
Q  228 acatatgtgtagtaagaatggtcat 252  Q
    |||| |||||||||||||| |||||    
T  19419177 acatttgtgtagtaagaattgtcat 19419153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 17728380 - 17728525
Alignment:
Q  113 tgtttaaaggttaacaatgtctctcgatctttctcattgcatcgaaccactgtgtgat---tgctgcacatgcttttgtagaatgtggttattgataaaa 209  Q
    ||||| || ||||||| ||||||  |||||||||||||||||||||||| ||||||||   ||||  | |||||||| |||||||||||||| ||||| |    
T  17728380 tgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttagaatgtggttatagataaga 17728479  T
Q  210 gtataagcaaaagaagtgacatatgtgtagtaagaatggtcatgag 255  Q
     || |||||||||||||||||| |||||||||| ||||||||||||    
T  17728480 ttagaagcaaaagaagtgacatttgtgtagtaaaaatggtcatgag 17728525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 19029609 - 19029754
Alignment:
Q  113 tgtttaaaggttaacaatgtctctcgatctttctcattgcatcgaaccactgtgtgat---tgctgcacatgcttttgtagaatgtggttattgataaaa 209  Q
    ||||| || ||||||| ||||||  |||||||||||||||||||||||| ||||||||   ||||  | |||||||| |||||||||||||| ||||| |    
T  19029609 tgtttgaaagttaacagtgtctcaagatctttctcattgcatcgaaccaatgtgtgatcattgctagaaatgcttttttagaatgtggttatagataaga 19029708  T
Q  210 gtataagcaaaagaagtgacatatgtgtagtaagaatggtcatgag 255  Q
     || |||||||||||||||||| |||||||||| ||||||||||||    
T  19029709 ttagaagcaaaagaagtgacatttgtgtagtaaaaatggtcatgag 19029754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 18015340 - 18015235
Alignment:
Q  143 ttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtagtaa 242  Q
    ||||||||||||||||||| ||||||||||||||||||| || ||| |||||||||||| |||||||| | ||| |||||||||||||| |||||||| |    
T  18015340 ttctcattgcatcgaaccaatgtgtgattgctgcacatggttatgtggaatgtggttatagataaaaggagaaggaaaagaagtgacatttgtgtagtta 18015241  T
Q  243 gaatgg 248  Q
    ||||||    
T  18015240 gaatgg 18015235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 16653225 - 16653321
Alignment:
Q  156 gaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtagtaagaatggtcat 252  Q
    |||||| |||||||||| |||||||| ||||   |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  16653225 gaaccaatgtgtgattggtgcacatgatttttaggaatgtggttattgataaaagtataagcaaaataagtgacatttgtgtagtaagaatggtcat 16653321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 661 - 757
Target Start/End: Complemental strand, 18163508 - 18163412
Alignment:
Q  661 caatgtcaatgttccagaaccacaataaaagaagacgtgtcgggttcaagtgtgagtggatagtcctacattaactatgtatgggttaaatattgga 757  Q
    |||||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||||||| ||||||||||  ||||| |||||||||||    
T  18163508 caatgtcaatgttccagaaccacaataaagaaagaggtgttgggttcaagtgtgagtggatagtcctgcattaactataaatgggctaaatattgga 18163412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 19012120 - 19012216
Alignment:
Q  156 gaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtagtaagaatggtcat 252  Q
    |||||| |||||||||| |||||||| ||||   |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  19012120 gaaccaatgtgtgattggtgcacatgatttttaggaatgtggttattgataaaagtataagcaaaataagtgacatttgtgtagtaagaatggtcat 19012216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 16676592 - 16676380
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||||||  |||||||||||||  ||||||| || |||||||||||||| ||||| |||  || |  ||||  | |||| || ||||| |||||||||    
T  16676592 gttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgccttgtttgaaggttaac 16676493  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgat---tgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaa 224  Q
    ||||||| | |||| ||||||||||||| ||||| | ||||||   ||||  | |||||||||| |||||||||||   ||||||||| |||||||| ||    
T  16676492 aatgtcttttgatccttctcattgcatctaaccaatctgtgatcattgctagatatgcttttgtggaatgtggttacaaataaaagtagaagcaaaataa 16676393  T
Q  225 gtgacatatgtgt 237  Q
    ||||||| |||||    
T  16676392 gtgacatttgtgt 16676380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 19423897 - 19423765
Alignment:
Q  123 ttaacaatgtctctcgatctttctcattgcatcgaaccactgtgtg---attgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaa 219  Q
    |||||||||||||| ||||||||| |||||| | || |||  ||||   ||||||  ||||| || ||| ||||||||||||||||||||||||||||||    
T  19423897 ttaacaatgtctcttgatctttcttattgcaaccaagcaccctgtggttattgctagacatggttatgtggaatgtggttattgataaaagtataagcaa 19423798  T
Q  220 aagaagtgacatatgtgtagtaagaatggtcat 252  Q
    ||||||||| || ||| ||||| ||||| ||||    
T  19423797 aagaagtgaaatttgtatagtaggaatgatcat 19423765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 778 - 831
Target Start/End: Complemental strand, 30731859 - 30731806
Alignment:
Q  778 gataaagctaaaaattcaatataaaagtcaggtgatgcctgaacctcatacaag 831  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  30731859 gataaagctagaaattcaatataaaagtcaggtgatgcctgaacctcaaacaag 30731806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1192 - 1266
Target Start/End: Complemental strand, 18163326 - 18163256
Alignment:
Q  1192 taattaatccttgtatcattgttttgataatgaagagatgtatctagctagtctccttttggaacacaggttctg 1266  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||     ||||||||||||||||| ||||||    
T  18163326 taattaatccttgtatcattgttttgataaggaagagatgtttctaa----tctccttttggaacacaagttctg 18163256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 431
Target Start/End: Complemental strand, 17940840 - 17940706
Alignment:
Q  300 gattcttgtgtgattatatgtataag--atttttcttttgatattatgtataagaagatgtt-gttaaataatgggaaagcatgaaaaatgaaatagctc 396  Q
    |||||||||||||||||||| |||||   ||||| ||||||  |||||||||||| | |||| | ||| |||||||||| |||||||||  | |||| ||    
T  17940840 gattcttgtgtgattatatgcataagtttttttttttttgacgttatgtataagatggtgttaggtaattaatgggaaaacatgaaaaaaaatataggtc 17940741  T
Q  397 aaaacaagatgacttttaaaaagtaggagaagact 431  Q
    ||||  |||| ||||| ||||| || |||||||||    
T  17940740 aaaagtagataactttgaaaaaatatgagaagact 17940706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1069 - 1125
Target Start/End: Complemental strand, 18163402 - 18163341
Alignment:
Q  1069 tatagagatgattcatataatgtcttaa-----tagtgaagatataacgtctctaacaacat 1125  Q
    ||||||||||||||||||| ||||||||     ||| |||||||| ||||||||||||||||    
T  18163402 tatagagatgattcatatattgtcttaaggttttagcgaagatatgacgtctctaacaacat 18163341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 9e-61; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 9e-61
Query Start/End: Original strand, 901 - 1065
Target Start/End: Complemental strand, 4277445 - 4277279
Alignment:
Q  901 gacatatgcaatctaatcaaaaggtaaaaaggtaa--tgaaacatcccaagactcaaacatatttgggattgcttttaaagacaccctttttggatcgag 998  Q
    |||||||||||||||||||||||| | ||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||     
T  4277445 gacatatgcaatctaatcaaaaggcagaaaggtaaaatgaaacatcccaatactcaaacatatttgggattgcttttaatgacaccctttttggattgat 4277346  T
Q  999 tttggatgtgctcactatttgtgatgccgccagaaccgtttccattaggactcttatgttttctaga 1065  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4277345 tttggatgtgctcactacttgtgatgccaccacaaccgtttccattaggactcttatgttttctaga 4277279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 937 - 1065
Target Start/End: Original strand, 25862592 - 25862720
Alignment:
Q  937 gaaacatcccaagactcaaacatatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgccgccagaaccg 1036  Q
    |||||||| || ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| || |||||     
T  25862592 gaaacatctcatgactcaaacatatttaggattgcttttaattacaccctttttggatcgagtttggatgtgctcactacttgtgatgccaccggaacct 25862691  T
Q  1037 tttccattaggactcttatgttttctaga 1065  Q
    |||||||||||||||||||||||||||||    
T  25862692 tttccattaggactcttatgttttctaga 25862720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 778 - 831
Target Start/End: Complemental strand, 4277568 - 4277515
Alignment:
Q  778 gataaagctaaaaattcaatataaaagtcaggtgatgcctgaacctcatacaag 831  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  4277568 gataaagctaaaatttcaatataaaagccaggtgatgcctgaacctcatacaag 4277515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 778 - 831
Target Start/End: Original strand, 15483957 - 15484010
Alignment:
Q  778 gataaagctaaaaattcaatataaaagtcaggtgatgcctgaacctcatacaag 831  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  15483957 gataaagctagaaattcaatataaaagtcaggtgatgcctgaacctcaaacaag 15484010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 984 - 1026
Target Start/End: Complemental strand, 32025314 - 32025272
Alignment:
Q  984 cctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  32025314 cctttttggaacgagtttggatgtgctcactacttgtgatgcc 32025272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 980 - 1026
Target Start/End: Complemental strand, 32033837 - 32033791
Alignment:
Q  980 acaccctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  32033837 acaccctttttggaacgagtttggatatgctcactacttgtgatgcc 32033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 958 - 1021
Target Start/End: Complemental strand, 38836205 - 38836142
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtg 1021  Q
    |||||||||||||||||| |  ||||| |||||||| |||||||| || ||||||||| |||||    
T  38836205 atatttgggattgcttttgataacaccatttttggaacgagtttgtatatgctcactacttgtg 38836142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 958 - 1021
Target Start/End: Original strand, 49094549 - 49094612
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtg 1021  Q
    |||||||||||||||||| |  ||||| |||||||| || ||||| |||||||||||| |||||    
T  49094549 atatttgggattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactacttgtg 49094612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 115; Significance: 9e-58; HSPs: 2)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 40 - 435
Target Start/End: Original strand, 536 - 913
Alignment:
Q  40 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 139  Q
    |||||||||||| ||||||||||| ||||| |||||||| ||||| |||  |||| |||||| | ||||  ||||||| ||||||||||||||||| |||    
T  536 gactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacga 635  T
Q  140 tctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtag 239  Q
    |||||||||||||||| |||||| ||||||||| ||||  || ||||||  ||||||||||   ||||||||| ||| ||||||| ||| || |||||||    
T  636 tctttctcattgcatctaaccacagtgtgattggtgcaagtgattttgtgaaatgtggttacatataaaagtagaagaaaaagaaatgatatttgtgtag 735  T
Q  240 taagaatggtcatgagctttatttggattagagaggaagatgtaattcaaatatgagtctgattcttgtgtgattatatgtataagatttttcttttgat 339  Q
    |||||||||||||||| ||| ||| | | | ||| |||||| ||||||||||||||||||||||               ||||||||||  | ||||||     
T  736 taagaatggtcatgagttttgttttgctcaaagaagaagatctaattcaaatatgagtctgatt--------------ggtataagattaattttttgac 821  T
Q  340 attatgtataagaagatgttgttaaataatgggaaagcatgaaaaatgaaatagctcaaaacaagatgacttttaaaaagtaggagaagactttga 435  Q
      |||||||   ||||||||||||  ||||||||||||||||||||  | |||||||||||| |||||||||| ||||  ||||||||||||||||    
T  822 gctatgtat---aagatgttgttagctaatgggaaagcatgaaaaa-aatatagctcaaaactagatgactttaaaaacttaggagaagactttga 913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 959 - 1016
Alignment:
Q  479 ttcaaacaagaagatttaattggaaaagtagagaagcctttgaaattatcttgaactta 537  Q
    ||||||||| |||| ||||||||||||| |||||||  ||||||||||| |||||||||    
T  959 ttcaaacaacaagacttaattggaaaagaagagaag-atttgaaattattttgaactta 1016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 115; Significance: 9e-58; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 40 - 435
Target Start/End: Complemental strand, 4794 - 4417
Alignment:
Q  40 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 139  Q
    |||||||||||| ||||||||||| ||||| |||||||| ||||| |||  |||| |||||| | ||||  ||||||| ||||||||||||||||| |||    
T  4794 gactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacga 4695  T
Q  140 tctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgtag 239  Q
    |||||||||||||||| |||||| ||||||||| ||||  || ||||||  ||||||||||   ||||||||| ||| ||||||| ||| || |||||||    
T  4694 tctttctcattgcatctaaccacagtgtgattggtgcaagtgattttgtgaaatgtggttacatataaaagtagaagtaaaagaaatgatatttgtgtag 4595  T
Q  240 taagaatggtcatgagctttatttggattagagaggaagatgtaattcaaatatgagtctgattcttgtgtgattatatgtataagatttttcttttgat 339  Q
    |||||||||||||||| ||| ||| | | | ||| |||||| ||||||||||||||||||||||               ||||||||||  | ||||||     
T  4594 taagaatggtcatgagttttgttttgctcaaagaagaagatctaattcaaatatgagtctgatt--------------ggtataagattaattttttgac 4509  T
Q  340 attatgtataagaagatgttgttaaataatgggaaagcatgaaaaatgaaatagctcaaaacaagatgacttttaaaaagtaggagaagactttga 435  Q
      |||||||   ||||||||||||  ||||||||||||||||||||  | |||||||||||| |||||||||| ||||  ||||||||||||||||    
T  4508 gctatgtat---aagatgttgttagctaatgggaaagcatgaaaaa-aatatagctcaaaactagatgactttgaaaacttaggagaagactttga 4417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 4371 - 4314
Alignment:
Q  479 ttcaaacaagaagatttaattggaaaagtagagaagcctttgaaattatcttgaactta 537  Q
    ||||||||| |||| ||||||||||||| |||||||  ||||||||||| |||||||||    
T  4371 ttcaaacaacaagacttaattggaaaagaagagaag-atttgaaattattttgaactta 4314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 3e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 906 - 1065
Target Start/End: Complemental strand, 31934842 - 31934682
Alignment:
Q  906 atgcaatctaatcaaaaggtaaaaaggtaa--tgaaacatcccaagactcaaacatatttgggattgcttttaaagacaccctttttggatcgagtttgg 1003  Q
    ||||||||||||||||||| |||| |||||  ||||||||||| ||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||||    
T  31934842 atgcaatctaatcaaaaggcaaaa-ggtaaaatgaaacatcccgagactcaaacatatttgagattgcttttaattacaccctttttagatcgagtttgg 31934744  T
Q  1004 atgtgctcactatttgtgatgccgccagaaccgtttccattaggactcttatgttttctaga 1065  Q
    |||| ||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  31934743 atgttctcactacttgtgatgccaccagaacctttttcattaggactcttatgttttctaga 31934682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 13667495 - 13667663
Alignment:
Q  28 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 127  Q
    |||||| ||| |||||||||||||||||||||||   ||||| |||||||| ||||| |||  |||| || | | | ||| ||||||||| ||||||||     
T  13667495 gttgtcacagtggactccttcccaagcacaacaacttttttcggttgaccacgttgatatccgaccaagagtgtcattgactccctgtttgaaggttaag 13667594  T
Q  128 aatgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtg 196  Q
    | ||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||| |||||    
T  13667595 agtgtctctcgatctttctcattgcattgaaccaatgtgtgattgttgcacatggttttgtagtatgtg 13667663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 954 - 1026
Target Start/End: Original strand, 10501971 - 10502043
Alignment:
Q  954 aaacatatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    |||||||||||||||||||||| |  |||||||||||||| |||||||||||||||| |||| ||||||||||    
T  10501971 aaacatatttgggattgctttttattacaccctttttggaacgagtttggatgtgcttactacttgtgatgcc 10502043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 779 - 831
Target Start/End: Complemental strand, 31934961 - 31934909
Alignment:
Q  779 ataaagctaaaaattcaatataaaagtcaggtgatgcctgaacctcatacaag 831  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  31934961 ataaagctaaacattcaatataaaagtcaggtgaagcctgaacctcatacaag 31934909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 2e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 39 - 252
Target Start/End: Complemental strand, 15531758 - 15531545
Alignment:
Q  39 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 138  Q
    |||||||| |||||||||||||||  |||||| | |||||  ||||||||  ||||  ||||| | |||  |||||||| |||||||||| |||||||||    
T  15531758 ggactcctccccaagcacaacaatttttttcaatagaccacattgaaatccgaccaaaactatcattgacaccctgtttgaaggttaacagtgtctctcg 15531659  T
Q  139 atctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgacatatgtgta 238  Q
    |||||||||||| ||| |||| | ||||| |||| ||||||||||||||| ||||||||| ||  ||||||||| || ||| ||||||||||| |||| |    
T  15531658 atctttctcattacattgaacaaatgtgttattggtgcacatgcttttgtggaatgtggtaatacataaaagtaaaaccaatagaagtgacatttgtgaa 15531559  T
Q  239 gtaagaatggtcat 252  Q
    ||||||||||||||    
T  15531558 gtaagaatggtcat 15531545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 954 - 1026
Target Start/End: Original strand, 16595094 - 16595166
Alignment:
Q  954 aaacatatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    |||||||||||||||||||||| |  |||||||||||| | ||||||||||||| ||||||| ||||||||||    
T  16595094 aaacatatttgggattgctttttataacaccctttttgaaacgagtttggatgtactcactacttgtgatgcc 16595166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 958 - 1021
Target Start/End: Original strand, 3958949 - 3959012
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtg 1021  Q
    |||||||||||||||||| | |||||||||||| || |||||||| ||||||||||||||||||    
T  3958949 atatttgggattgcttttgatgacaccctttttagaacgagtttgtatgtgctcactatttgtg 3959012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 958 - 1021
Target Start/End: Complemental strand, 2049050 - 2048987
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtg 1021  Q
    |||||||||||||||||| |  |||||||||||||| |||||||| || ||||||||| |||||    
T  2049050 atatttgggattgcttttgataacaccctttttggaacgagtttgtatatgctcactacttgtg 2048987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 958 - 1021
Target Start/End: Complemental strand, 39735879 - 39735816
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtg 1021  Q
    |||||| ||||||||||| |  |||||||| ||||| |||||||| |||||||||||| |||||    
T  39735879 atattttggattgcttttgattacacccttcttggaacgagtttgtatgtgctcactacttgtg 39735816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 8458889 - 8458667
Alignment:
Q  30 tgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaa 129  Q
    |||| ||| ||||||||| ||| ||||||||||| |||||||||||||| ||||| ||  ||||| |||||| | |||  |||||||| ||||||||||     
T  8458889 tgtcacagtggactcctttccacgcacaacaatctttttcagttgaccacgttgatattataccacgactatcattgaggccctgtttgaaggttaacat 8458790  T
Q  130 tgtctctcgatctttctcattgcatcgaaccactgtgtgattgctgcacatgcttttgtagaatgtggttattgataaaagtataagcaaaagaagtgac 229  Q
    ||| | ||| || ||||||||||||  || || |||||| ||||||||||||||||||| |||||||||||  ||||| |||| ||||||||||| ||||    
T  8458789 tgtttgtcggtcattctcattgcatgaaaacaatgtgtggttgctgcacatgcttttgtggaatgtggttacagataacagtagaagcaaaagaattgac 8458690  T
Q  230 atatgtgtagtaagaatggtcat 252  Q
    || |||| |  ||||||||||||    
T  8458689 atttgtgaaacaagaatggtcat 8458667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 952 - 1026
Target Start/End: Complemental strand, 4922845 - 4922771
Alignment:
Q  952 tcaaacatatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    |||||||||||||||| ||||||| | || |||||||||||| |||||||| |||||||||||| || |||||||    
T  4922845 tcaaacatatttgggaatgctttttatgagaccctttttggaacgagtttgaatgtgctcactacttatgatgcc 4922771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 958 - 1015
Target Start/End: Complemental strand, 6596582 - 6596525
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcacta 1015  Q
    |||||| ||||||||||| |  ||||||||||| ||  ||||||||||||||||||||    
T  6596582 atatttaggattgcttttgattacaccctttttagaatgagtttggatgtgctcacta 6596525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 3e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 937 - 1065
Target Start/End: Complemental strand, 18188006 - 18187877
Alignment:
Q  937 gaaacatcccaagactcaaa-catatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgccgccagaacc 1035  Q
    |||||||| || |||||||| |||||||||||||||||| ||  ||||||| |||| ||||||||||||||||||||||| |||||||||| || |||||    
T  18188006 gaaacatctcatgactcaaaacatatttgggattgctttaaattacaccctctttgaatcgagtttggatgtgctcactacttgtgatgccaccggaacc 18187907  T
Q  1036 gtttccattaggactcttatgttttctaga 1065  Q
     ||| |||||||||||||||||||||||||    
T  18187906 tttttcattaggactcttatgttttctaga 18187877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 952 - 1022
Target Start/End: Original strand, 42080689 - 42080759
Alignment:
Q  952 tcaaacatatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtga 1022  Q
    |||||||||||||||||||||||| |  |||||||||||||| ||||||||||||||||||||| ||||||    
T  42080689 tcaaacatatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactacttgtga 42080759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 41407113 - 41407201
Alignment:
Q  479 ttcaaacaagaagatttaattggaaaagtagagaagcctttgaaattatcttgaacttaat----atacatattaattttagctatagtc 564  Q
    ||||||||| |||| ||||||||||||| |||||||  ||||||||||| ||||||||| |    |||||||||||||||||||||||||    
T  41407113 ttcaaacaacaagacttaattggaaaagaagagaaga-tttgaaattattttgaacttatttattatacatattaattttagctatagtc 41407201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 952 - 1044
Target Start/End: Complemental strand, 40632918 - 40632826
Alignment:
Q  952 tcaaacatatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgccgccagaaccgtttccatt 1044  Q
    |||||||||||||||||||||||| |  || |||||||| ||  |||||||||| |||||||||  |||||||||  ||||||| || |||||    
T  40632918 tcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgctcactacctgtgatgccatcagaacctttgccatt 40632826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 952 - 1026
Target Start/End: Complemental strand, 9057995 - 9057921
Alignment:
Q  952 tcaaacatatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    ||||||||||||| |||||||||| |  ||||||||||||   | ||||||||||||||||||| |||| |||||    
T  9057995 tcaaacatatttgagattgcttttgattacaccctttttgagacaagtttggatgtgctcactacttgtaatgcc 9057921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 958 - 1015
Target Start/End: Original strand, 43403898 - 43403955
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcacta 1015  Q
    |||||||||||||||||| | |||||||||||| || |||||||| || || ||||||    
T  43403898 atatttgggattgcttttgatgacaccctttttagaacgagtttgtatttgttcacta 43403955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 957 - 1026
Target Start/End: Original strand, 30426132 - 30426201
Alignment:
Q  957 catatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    ||||||| |||||| |||| |  |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30426132 catattttggattgttttttattacaccctttttggaacgagtttggatgtgctcactacttgtgatgcc 30426201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 957 - 1024
Target Start/End: Original strand, 32229983 - 32230050
Alignment:
Q  957 catatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcactatttgtgatg 1024  Q
    ||||||| |||||| |||| |  |||||||||||||| ||||||||||||||||||||| ||||||||    
T  32229983 catattttggattgttttttattacaccctttttggaacgagtttggatgtgctcactacttgtgatg 32230050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 778 - 831
Target Start/End: Original strand, 27147119 - 27147172
Alignment:
Q  778 gataaagctaaaaattcaatataaaagtcaggtgatgcctgaacctcatacaag 831  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||||| |||||    
T  27147119 gataaagctagaaattcaatataaaagtcaggagatgtctgaacctcaaacaag 27147172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 778 - 830
Target Start/End: Complemental strand, 44176774 - 44176723
Alignment:
Q  778 gataaagctaaaaattcaatataaaagtcaggtgatgcctgaacctcatacaa 830  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  44176774 gataaagctagaaattcaata-aaaagccaggtgatgcctgaacctcatacaa 44176723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 958 - 1015
Target Start/End: Original strand, 21949901 - 21949958
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcacta 1015  Q
    |||||||||||||||||| |  ||||||||||| || |||||||| ||||||||||||    
T  21949901 atatttgggattgcttttgattacaccctttttagaacgagtttgtatgtgctcacta 21949958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 958 - 1015
Target Start/End: Complemental strand, 9447032 - 9446975
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcacta 1015  Q
    |||||||||||||||||| |  |||||||||||||| || |||||  |||||||||||    
T  9447032 atatttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcacta 9446975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 958 - 1015
Target Start/End: Complemental strand, 31320313 - 31320256
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcacta 1015  Q
    |||||||||||||||||| |  |||||||||||||| || ||||| ||| ||||||||    
T  31320313 atatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcacta 31320256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 958 - 1015
Target Start/End: Complemental strand, 40275201 - 40275144
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcacta 1015  Q
    |||||||||||||||||| | |||||||||||| || |||||||| || || ||||||    
T  40275201 atatttgggattgcttttgatgacaccctttttagaacgagtttgtatttgttcacta 40275144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 958 - 1003
Target Start/End: Original strand, 41411526 - 41411571
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttgg 1003  Q
    |||||||||||||||||| |  |||||||||||||| |||||||||    
T  41411526 atatttgggattgcttttgattacaccctttttggaacgagtttgg 41411571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 980 - 1026
Target Start/End: Complemental strand, 27584740 - 27584694
Alignment:
Q  980 acaccctttttggatcgagtttggatgtgctcactatttgtgatgcc 1026  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  27584740 acaccctttttggaacgagtttggatgtgctcactacttgtgatgcc 27584694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 779 - 831
Target Start/End: Complemental strand, 9383339 - 9383287
Alignment:
Q  779 ataaagctaaaaattcaatataaaagtcaggtgatgcctgaacctcatacaag 831  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||| |||||    
T  9383339 ataaagctagaaattcaatataaaagtcaggagatgtctgaacctcaaacaag 9383287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 958 - 1015
Target Start/End: Complemental strand, 31610101 - 31610044
Alignment:
Q  958 atatttgggattgcttttaaagacaccctttttggatcgagtttggatgtgctcacta 1015  Q
    |||||||||||||||||| |  ||||||||||| || || ||||| ||||||||||||    
T  31610101 atatttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcacta 31610044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University