View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_low_13 (Length: 320)
Name: NF12239_low_13
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 24639382 - 24639076
Alignment:
| Q |
1 |
tacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattgtttcctacatatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639382 |
tacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattgtttcctacatatattg |
24639283 |
T |
|
| Q |
101 |
ctcattatgaaatggagttatttccccgtttttctaaaaaaccgcatgtgttcagaagtatactttcaaacg--nnnnnnnnnnnnnnnnctgtttttgt |
198 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
24639282 |
ctcattatgaaatggagttatttccccgtgtttctaaaaaaccgcatgtgtccagaagtatactttcaaacgaaaaaaaaaaaaaaaaaactgtttttgt |
24639183 |
T |
|
| Q |
199 |
atgaaagtatgcttctggacgacataaaactgtgtttttctagaagatatttccgaagtgactttggggctgggaaaagacgttcctgtcgggatatcat |
298 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639182 |
atgaaactatgcttctggacggcataaaactgtgtttttctagaagatatttccgaagtgactttggggctgggaaaagacgttcctgtcgggatatcat |
24639083 |
T |
|
| Q |
299 |
catatat |
305 |
Q |
| |
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||||||| |
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| T |
24639082 |
catatat |
24639076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 52491384 - 52491690
Alignment:
| Q |
1 |
tacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattgtttcctacatatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491384 |
tacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacattgtttcctacatatattg |
52491483 |
T |
|
| Q |
101 |
ctcattatgaaatggagttatttccccgtttttctaaaaaaccgcatgtgttcagaagtatactttcaaacg--nnnnnnnnnnnnnnnnctgtttttgt |
198 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
52491484 |
ctcattatgaaatggagttatttccccgtgtttctaaaaaaccgcatgtgtccagaagtatactttcaaacgaaaaaaaaaaaaaaaaaactgtttttgt |
52491583 |
T |
|
| Q |
199 |
atgaaagtatgcttctggacgacataaaactgtgtttttctagaagatatttccgaagtgactttggggctgggaaaagacgttcctgtcgggatatcat |
298 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491584 |
atgaaactatgcttctggacggcataaaactgtgtttttctagaagatatttccgaagtgactttggggctgggaaaagacgttcctgtcgggatatcat |
52491683 |
T |
|
| Q |
299 |
catatat |
305 |
Q |
| |
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||||||| |
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|
| T |
52491684 |
catatat |
52491690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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