View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12239_low_16 (Length: 302)

Name: NF12239_low_16
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12239_low_16
NF12239_low_16
[»] chr7 (2 HSPs)
chr7 (5-238)||(46443726-46443959)
chr7 (245-283)||(46756274-46756312)
[»] chr1 (4 HSPs)
chr1 (248-302)||(11469752-11469806)
chr1 (245-302)||(11469085-11469142)
chr1 (247-300)||(14924680-14924733)
chr1 (245-302)||(14925329-14925386)
[»] chr4 (4 HSPs)
chr4 (246-300)||(10421570-10421624)
chr4 (245-302)||(6246788-6246845)
chr4 (245-298)||(6247462-6247515)
chr4 (245-300)||(15481559-15481614)
[»] scaffold0189 (2 HSPs)
scaffold0189 (245-300)||(12188-12243)
scaffold0189 (245-302)||(12846-12903)
[»] chr8 (4 HSPs)
chr8 (245-300)||(43925007-43925062)
chr8 (245-302)||(12349971-12350028)
chr8 (245-302)||(12350641-12350698)
chr8 (248-300)||(43924497-43924549)
[»] chr3 (2 HSPs)
chr3 (245-300)||(38337466-38337521)
chr3 (248-300)||(38336951-38337003)
[»] chr2 (1 HSPs)
chr2 (245-287)||(41985894-41985936)
[»] chr6 (1 HSPs)
chr6 (248-300)||(27763420-27763472)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 46443726 - 46443959
Alignment:
Q  5 cgatcattatgctatgtttgaagggatatatcatataaaagatgatttgtgaagttcatatacaaaatttcacgttgacatattttacatccaannnnnn 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  46443726 cgatcattatgatatgtttgaagggatatatcatataaaagatgatttgtgaagttcatatacaaaatttcacgttgacatattttacatccaatttttt 46443825  T
Q  105 nnnnnnnnnnnnttgtatccaaactaaacacnnnnnnnncaatttaggaagaaacttgtttcattttaaacttgtgttaggtaagtcactcaagttagtg 204  Q
                ||||||||||| ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46443826 tacaaaaaaaaattgtatccaaattaaacatttttttttcaatttaggaagaaacttgtttcattttaaacttgtgttaggtaagtcactcaagttagtg 46443925  T
Q  205 atatgtgccgtaaagtgaccaactcacgacgaaa 238  Q
    ||||||||   ||||| ||||||||| |||||||    
T  46443926 atatgtgcgacaaagttaccaactcatgacgaaa 46443959  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 46756274 - 46756312
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgg 283  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  46756274 gcgtttaatttgggaaagggaagttgttttccaccatgg 46756312  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 11469806 - 11469752
Alignment:
Q  248 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccat 302  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  11469806 tttaatttgggaaagggaagttgtttttcaccatggaaaaactaattttgaccat 11469752  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 11469085 - 11469142
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccat 302  Q
    ||||||||||| | |||||||||||||||  ||||||||||||  |||||||||||||    
T  11469085 gcgtttaatttaggaaagggaagttgtttcccaccatgggaaagctaattttgaccat 11469142  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 14924680 - 14924733
Alignment:
Q  247 gtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    ||||||||||| |||||||||||||||  ||||||||||||  |||||||||||    
T  14924680 gtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgacc 14924733  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 14925386 - 14925329
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccat 302  Q
    |||||||||||||  |||| |||||||||  ||||||||||||  |||||||||||||    
T  14925386 gcgtttaatttggggaaggaaagttgtttcccaccatgggaaagctaattttgaccat 14925329  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 10421624 - 10421570
Alignment:
Q  246 cgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    |||||||||||| |||||||||||||||| ||||||||||||  |||||||||||    
T  10421624 cgtttaatttgggaaagggaagttgttttccaccatgggaaagctaattttgacc 10421570  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 6246788 - 6246845
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccat 302  Q
    ||||||||||||| |||||||| ||||||  |||||||||||| ||||||||||||||    
T  6246788 gcgtttaatttgggaaagggaaattgtttcccaccatgggaaagttaattttgaccat 6246845  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 6247515 - 6247462
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttga 298  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||| |||||||||    
T  6247515 gcgtttaatttgggaaagggaagttgtttctcatcatgggaaaactaattttga 6247462  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 15481614 - 15481559
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    ||||||||||||  |||||||||||||||  ||| ||||||||| |||||||||||    
T  15481614 gcgtttaatttgcgaaagggaagttgtttcccacaatgggaaaactaattttgacc 15481559  T

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Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 12188 - 12243
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    ||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||    
T  12188 gcgtttaatttgggaaagagaagttgtttcccaccatgagaaaattaattttgacc 12243  T

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Target: scaffold0189; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 12903 - 12846
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccat 302  Q
    |||||||||||||  ||| ||||||||||  |||||||||||| ||||||||||||||    
T  12903 gcgtttaatttggggaagtgaagttgtttcccaccatgggaaagttaattttgaccat 12846  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 43925062 - 43925007
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    ||||||||||||| |||||||||||||||  ||||||| |||| ||||||||||||    
T  43925062 gcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgacc 43925007  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 12349971 - 12350028
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccat 302  Q
    ||||||||||||| |||||||||||||||  |||||||| |||| ||||||| |||||    
T  12349971 gcgtttaatttgggaaagggaagttgtttcccaccatggaaaaactaattttaaccat 12350028  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 12350698 - 12350641
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgaccat 302  Q
    ||||||||||||| |||||||| ||||||  ||||||||||||  |||||||||||||    
T  12350698 gcgtttaatttgggaaagggaaattgtttcccaccatgggaaacctaattttgaccat 12350641  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 43924497 - 43924549
Alignment:
Q  248 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    |||||||||| |||||||||||||||  ||||||||||||  |||||||||||    
T  43924497 tttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgacc 43924549  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 38337521 - 38337466
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    ||||||||||||| |||||||||||||||  ||||||||||||  |||||||||||    
T  38337521 gcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgacc 38337466  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 38336951 - 38337003
Alignment:
Q  248 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    ||||||||||  ||||||||||||||  ||||||||||||  |||||||||||    
T  38336951 tttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgacc 38337003  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 41985936 - 41985894
Alignment:
Q  245 gcgtttaatttggaaaagggaagttgtttttcaccatgggaaa 287  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||    
T  41985936 gcgtttaatttgggaaagggaagttgttttccaccatgagaaa 41985894  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 27763420 - 27763472
Alignment:
Q  248 tttaatttggaaaagggaagttgtttttcaccatgggaaaattaattttgacc 300  Q
    ||||||||||  ||||||||||||||  ||||| ||||||| |||||||||||    
T  27763420 tttaatttggggaagggaagttgtttcccaccaagggaaaactaattttgacc 27763472  T

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