View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_low_2 (Length: 960)
Name: NF12239_low_2
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_low_2 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 895; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 895; E-Value: 0
Query Start/End: Original strand, 13 - 943
Target Start/End: Original strand, 8316065 - 8316995
Alignment:
| Q |
13 |
atggacatcactgataatatgatataacgcctgaacattcctaatacaggagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaattt |
112 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316065 |
atggacattactgataatatgatataaagcctgaacattcctaatacatgagtttatcttgtagaacataatatgcaaatgatctcaagatatgtaattt |
8316164 |
T |
|
| Q |
113 |
aagtttcaaagataccaaggaggacttatactaactggtattgaaattgcagtaagtaacatggaggctggttcaagtaaggttcacaagagtactcaaa |
212 |
Q |
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| T |
8316165 |
aagtttcaaagataccaaggaggacttatactaactggtattgaaattgcagtaagtaacatggaggctggttcaagtaaggttcacaagagtactcaaa |
8316264 |
T |
|
| Q |
213 |
tggcaagtgtaattgaagaagacacgatcaacagcaagctacctgaatcacttataaatcgcgttctgtctttcctccctacaaaagatgttgttcggac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316265 |
tggcaagtgtaattgaagaagacacgatcaacagcaagctacctgaatcacttataaatcgcgttctgtctttcctccctacaaaagatgttgttcggac |
8316364 |
T |
|
| Q |
313 |
ttgtgcgttgtccaagagctggatgaatcgatggacatcatccattaccaagctcgacttagatgatattgatttatcatacaattataatccattgtgt |
412 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316365 |
ttgtgtgttgtccaagagatggatgaatcgatggacatcatccatcaccaagctcgacttagatgatattgatttatcatacaattataatccattgtgt |
8316464 |
T |
|
| Q |
413 |
tcttattgtgaagaaatttgcactgattattgctatgactatgataaggttagttttctccctcttgttatcttatttgatagtccaccccaaaacattg |
512 |
Q |
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| T |
8316465 |
tcttattgcgaagaaatttgcactgattattgctatgactatgataaggttagttttctccctcttgttatcttatttgatagtccaccccaaaacattg |
8316564 |
T |
|
| Q |
513 |
atgataaattaagtaactctgatgattttggatgcagtataaattgactgtatgtccaaggtgtcatgtttgcggcaatcataaagccaatttgcgcgat |
612 |
Q |
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| T |
8316565 |
atgataaattaagtaactctgatgattttggatgcagtataaattgactgtatgtccaaggtgtcatgtttgcggaaatcataaagccaatttgcgcgat |
8316664 |
T |
|
| Q |
613 |
gcagaagtatatgaaaggcgtgtggagatagattttgagagcgggatgaaaatagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagag |
712 |
Q |
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| T |
8316665 |
gcagaagtatatgaaaggcgtgtggagatagattttgagagcgggatgaaaatagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagag |
8316764 |
T |
|
| Q |
713 |
cacttctccttacttcaatctcaagcatggagttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctag |
812 |
Q |
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| T |
8316765 |
cacttctccttacttcaatctcaagcatggagttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctag |
8316864 |
T |
|
| Q |
813 |
catcttgaatcggagagtaaaaattcttcggatccattcatctttttatcagctcctcttttctgctcttacatctcattatcttttcaactgcacctcc |
912 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316865 |
catcttgaatcggagagtaaaaattcttcggatccattcatctttttatcagctccccttttctgctcttacatctcattatcttttcaactgcacctcc |
8316964 |
T |
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| Q |
913 |
ttagaagaattagaattggtactccatgtgt |
943 |
Q |
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| T |
8316965 |
ttagaagaattagaattggtactccatgtgt |
8316995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 8359447 - 8359390
Alignment:
| Q |
279 |
tgtctttcctccctacaaaagatgttgttcggacttgtgcgttgtccaagagctggat |
336 |
Q |
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||||||| || || |||||||||| |||||| ||||||| |||||||||||| ||||| |
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| T |
8359447 |
tgtctttacttccgacaaaagatgctgttcgaacttgtgtgttgtccaagagatggat |
8359390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 785 - 900
Target Start/End: Complemental strand, 2125 - 2007
Alignment:
| Q |
785 |
tatcccttcaaaatacttggatctctagcatcttgaatc---ggagagtaaaaattcttcggatccattcatctttttatcagctcctcttttctgctct |
881 |
Q |
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|||| ||||||||||| |||||||||| |||||||||| ||||||| || | |||| |||||||||||| ||||||| | |||| ||||||| || |
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| T |
2125 |
tatcacttcaaaatacatggatctctaccatcttgaataataggagagtcaagaatcttaggatccattcatatttttataaactccccttttctcctag |
2026 |
T |
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| Q |
882 |
tacatctcattatcttttc |
900 |
Q |
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| T |
2025 |
tacatctgattatcttttc |
2007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 745 - 818
Target Start/End: Complemental strand, 28111777 - 28111704
Alignment:
| Q |
745 |
ttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatctt |
818 |
Q |
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||||||| |||||||| ||||| ||||||| ||| | |||| ||||||||||| ||||||||||||||||| |
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| T |
28111777 |
ttggaaaacttttcttttgtgatctataacaaacgttgtgtatcacttcaaaatacatggatctctagcatctt |
28111704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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