View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12239_low_24 (Length: 261)

Name: NF12239_low_24
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12239_low_24
NF12239_low_24
[»] chr1 (3 HSPs)
chr1 (1-249)||(13874837-13875085)
chr1 (11-90)||(33016540-33016619)
chr1 (11-60)||(15342757-15342806)
[»] chr7 (2 HSPs)
chr7 (11-90)||(1911131-1911210)
chr7 (11-106)||(965400-965498)
[»] chr3 (1 HSPs)
chr3 (11-115)||(11137769-11137873)
[»] chr6 (2 HSPs)
chr6 (11-106)||(15134870-15134965)
chr6 (10-106)||(32183942-32184038)
[»] chr4 (2 HSPs)
chr4 (11-106)||(44515913-44516008)
chr4 (11-60)||(12832369-12832418)
[»] chr8 (2 HSPs)
chr8 (11-90)||(37127513-37127592)
chr8 (11-56)||(32749331-32749376)
[»] chr2 (1 HSPs)
chr2 (11-106)||(9032529-9032624)
[»] chr5 (1 HSPs)
chr5 (11-111)||(23419021-23419121)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 13875085 - 13874837
Alignment:
Q  1 aaaatgaactttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13875085 aaaatgaactttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttat 13874986  T
Q  101 taagtactactataannnnnnnnaaatcggatatcatccgtgtgtgtaacaacagattaatccttcgagttgtgcgacttaaatggacggcaaactttcg 200  Q
    ||||||||||||||         ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||    
T  13874985 taagtactactatatttttttttaaaccggatatcatccgtgtgtgtaacaacagattgatccctcgagttgtgcgacctaaatggacggcaaaatttcg 13874886  T
Q  201 ttgagagtttcaacttttaacattattatgtccaaaactggattcgaac 249  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  13874885 ttgagagtttcaacttttaacattgttatgtccaaaactgaattcgaac 13874837  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 33016540 - 33016619
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaat 90  Q
    |||||||||||| |||| |||||||||||||||| ||| ||||||||||| ||  |||  |||||| |||| ||||||||    
T  33016540 ttttgttgaaattcaatgatataaaattatttgtggaacctatttaataatttcttttgaggtgttgggttggagaaaat 33016619  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 15342806 - 15342757
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataa 60  Q
    ||||||||||||| ||| |||||||||||||||| | | |||||||||||    
T  15342806 ttttgttgaaatataatgatataaaattatttgtaggacctatttaataa 15342757  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 1911131 - 1911210
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaat 90  Q
    ||||||||||||| |||||||||||||||||||| | ||||||||||||| ||  |||| ||||||| ||| ||||||||    
T  1911131 ttttgttgaaatataataatataaaattatttgtgggatctatttaataatttcttttaaggtgttaagttggagaaaat 1911210  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 965400 - 965498
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataa--atttgtttag-ggtgttaggtttgagaaaataagtggttattaagta 106  Q
    ||||||||||||  ||| |||||||||||||||| ||| |||||||||||  |||| ||| | |||||| |||| ||||||||  ||| ||||||||||    
T  965400 ttttgttgaaatgtaatgatataaaattatttgtggaacctatttaataattatttcttttgaggtgttgggttggagaaaatgggtgtttattaagta 965498  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 11137769 - 11137873
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttattaagtactac 110  Q
    |||||||||||| |||| |||||||||||||||| | ||||||||||||| ||  |||  |||||| |||| |||||||| |||  |||||||||| |||    
T  11137769 ttttgttgaaatgcaatgatataaaattatttgtaggatctatttaataacttcttttgaggtgttgggttggagaaaattagtacttattaagtattac 11137868  T
Q  111 tataa 115  Q
     ||||    
T  11137869 aataa 11137873  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 15134965 - 15134870
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttattaagta 106  Q
    ||||||||||||  ||| |||||||||||||||| ||||||||||||||| ||  |||| |||  |||||| ||||||||  ||| ||||||||||    
T  15134965 ttttgttgaaatgtaatgatataaaattatttgtggaatctatttaataatttcttttaaggtactaggttggagaaaattggtgtttattaagta 15134870  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 32183942 - 32184038
Alignment:
Q  10 tttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttattaagta 106  Q
    |||||||||||||  ||| |||||||||||||||| | |  |||||||||| ||  |||  |||||| |||| ||||||||  ||| ||||||||||    
T  32183942 tttttgttgaaatgtaatgatataaaattatttgtaggacttatttaataatttcttttgaggtgttgggttggagaaaattggtgtttattaagta 32184038  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 44516008 - 44515913
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttattaagta 106  Q
    ||||||||||||  ||| ||||||||||||| || | ||||||||||||| ||  |||| |||| | |||| |||||||| |||| ||||||||||    
T  44516008 ttttgttgaaatgtaatgatataaaattattagtgggatctatttaataatttcttttaaggtgctgggttggagaaaatcagtgattattaagta 44515913  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 12832418 - 12832369
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataa 60  Q
    ||||||||||||  |||||||||||||||||||||| | |||||||||||    
T  12832418 ttttgttgaaatgtaataatataaaattatttgtcggacctatttaataa 12832369  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 37127592 - 37127513
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaat 90  Q
    ||||||||||||  ||| |||||||||||||||| | ||||||||||||| ||  |||| |||| | |||| ||||||||    
T  37127592 ttttgttgaaatgtaatgatataaaattatttgtgggatctatttaataatttattttaaggtgctcggttggagaaaat 37127513  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 32749376 - 32749331
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctattta 56  Q
    ||||||||||||| ||||||||| || ||||||||||| |||||||    
T  32749376 ttttgttgaaatataataatatataactatttgtcgaaactattta 32749331  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 9032624 - 9032529
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttattaagta 106  Q
    |||||||||||   ||| |||||||||||||||| | | |||||||||||  |  |||| |||||| |||| |||||||| |||| ||||||||||    
T  9032624 ttttgttgaaacgtaatgatataaaattatttgtgggacctatttaataatctcttttaaggtgttgggttggagaaaattagtgcttattaagta 9032529  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 23419021 - 23419121
Alignment:
Q  11 ttttgttgaaatacaataatataaaattatttgtcgaatctatttaataaatttgtttagggtgttaggtttgagaaaataagtggttattaagtactac 110  Q
    ||||||||||||  ||| |||||||||||||||| |   ||||||||||| ||  |||  |||| | |||| |||||||| |||| |||||||||| |||    
T  23419021 ttttgttgaaatgtaatgatataaaattatttgtagggcctatttaataatttcttttgaggtgctgggttggagaaaatcagtgcttattaagtattac 23419120  T
Q  111 t 111  Q
    |    
T  23419121 t 23419121  T

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