View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12239_low_29 (Length: 226)

Name: NF12239_low_29
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12239_low_29
NF12239_low_29
[»] chr1 (11 HSPs)
chr1 (31-179)||(11469081-11469231)
chr1 (31-179)||(14925243-14925390)
chr1 (38-139)||(11469705-11469806)
chr1 (31-139)||(14924674-14924782)
chr1 (31-139)||(31787478-31787586)
chr1 (45-139)||(31788216-31788310)
chr1 (61-135)||(38618260-38618334)
chr1 (60-137)||(7463444-7463521)
chr1 (60-137)||(7464012-7464089)
chr1 (60-137)||(11426882-11426959)
chr1 (60-137)||(11427449-11427526)
[»] chr8 (14 HSPs)
chr8 (30-139)||(12350594-12350703)
chr8 (31-139)||(12349967-12350075)
chr8 (31-139)||(43924958-43925066)
chr8 (54-139)||(43972026-43972111)
chr8 (38-137)||(43924497-43924596)
chr8 (53-134)||(39257656-39257737)
chr8 (54-139)||(43971301-43971386)
chr8 (70-137)||(38686342-38686409)
chr8 (61-134)||(38687000-38687073)
chr8 (76-137)||(39258391-39258452)
chr8 (85-137)||(33801553-33801605)
chr8 (74-137)||(15183790-15183853)
chr8 (61-134)||(33802318-33802391)
chr8 (29-97)||(40450968-40451036)
[»] chr4 (21 HSPs)
chr4 (31-179)||(6246784-6246934)
chr4 (31-139)||(6247410-6247519)
chr4 (37-139)||(10421521-10421623)
chr4 (37-139)||(15481510-15481612)
chr4 (80-179)||(10420966-10421064)
chr4 (37-137)||(15481041-15481141)
chr4 (85-137)||(50709713-50709765)
chr4 (61-137)||(50710359-50710435)
chr4 (48-137)||(45331395-45331484)
chr4 (61-134)||(53664242-53664315)
chr4 (31-99)||(232029-232097)
chr4 (85-137)||(53665028-53665080)
chr4 (85-127)||(13856645-13856687)
chr4 (45-134)||(30808635-30808724)
chr4 (45-137)||(30809447-30809539)
chr4 (60-135)||(34956313-34956388)
chr4 (45-135)||(6680286-6680376)
chr4 (60-134)||(34956983-34957057)
chr4 (73-135)||(50709034-50709096)
chr4 (30-99)||(231435-231503)
chr4 (45-137)||(45330579-45330671)
[»] scaffold0189 (2 HSPs)
scaffold0189 (31-179)||(12760-12907)
scaffold0189 (31-139)||(12184-12292)
[»] chr3 (9 HSPs)
chr3 (30-139)||(38337417-38337526)
chr3 (38-137)||(38336951-38337048)
chr3 (38-137)||(49287694-49287793)
chr3 (45-124)||(15450240-15450318)
chr3 (45-134)||(55124428-55124517)
chr3 (45-97)||(27452637-27452689)
chr3 (31-65)||(42108370-42108404)
chr3 (45-97)||(33968195-33968247)
chr3 (56-135)||(44022031-44022110)
[»] chr5 (7 HSPs)
chr5 (45-179)||(4555290-4555423)
chr5 (30-138)||(4554656-4554764)
chr5 (54-137)||(6804775-6804858)
chr5 (45-135)||(4789534-4789624)
chr5 (45-110)||(26712357-26712422)
chr5 (45-110)||(26982095-26982160)
chr5 (45-97)||(35262466-35262518)
[»] chr2 (16 HSPs)
chr2 (54-137)||(4976447-4976530)
chr2 (54-137)||(4994354-4994437)
chr2 (31-139)||(4975696-4975804)
chr2 (31-139)||(4993604-4993712)
chr2 (45-137)||(41519867-41519959)
chr2 (47-137)||(37545692-37545782)
chr2 (61-137)||(8536828-8536904)
chr2 (31-137)||(42369643-42369749)
chr2 (45-137)||(42370892-42370984)
chr2 (70-134)||(8536176-8536240)
chr2 (54-137)||(41768685-41768768)
chr2 (45-97)||(36390971-36391023)
chr2 (38-97)||(30545417-30545476)
chr2 (47-97)||(15602802-15602852)
chr2 (47-99)||(1271247-1271299)
chr2 (31-63)||(41985908-41985940)
[»] chr6 (1 HSPs)
chr6 (38-139)||(27763420-27763521)
[»] chr7 (7 HSPs)
chr7 (45-137)||(46757438-46757530)
chr7 (45-137)||(27599225-27599317)
chr7 (45-134)||(12732261-12732350)
chr7 (45-137)||(27600037-27600129)
chr7 (60-134)||(40905060-40905134)
chr7 (45-139)||(46759202-46759296)
chr7 (31-63)||(46756270-46756302)
[»] scaffold0071 (1 HSPs)
scaffold0071 (45-124)||(11873-11951)
[»] scaffold0041 (1 HSPs)
scaffold0041 (60-134)||(44884-44958)
[»] scaffold0119 (2 HSPs)
scaffold0119 (47-99)||(29938-29990)
scaffold0119 (55-99)||(36620-36664)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 11469081 - 11469231
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| ||||||||| ||||||||||||||||||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11469081 ggtggcgtttaatttaggaaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactc 11469180  T
Q  131 aacaccaga--nnnnnnnnccatattggcccaccacttgcagctgtcccaa 179  Q
    |||||||||           |||||||||||||||||||||||||||||||    
T  11469181 aacaccagatttttttttttcatattggcccaccacttgcagctgtcccaa 11469231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 14925390 - 14925243
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| |||||||||||| |||| ||||||||||| || ||||||||  ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  14925390 ggtggcgtttaatttggggaaggaaagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactc 14925291  T
Q  131 aacaccagannnnnnnnccatattggcccaccacttgcagctgtcccaa 179  Q
    |||||||||        |||||||||||||||||||||||||| |||||    
T  14925290 aacaccaga-tttttttccatattggcccaccacttgcagctgccccaa 14925243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 11469806 - 11469705
Alignment:
Q  38 tttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||||||||||||||||||||||||   || |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  11469806 tttaatttgggaaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacatacttttatcatagacattcaacacca 11469707  T
Q  138 ga 139  Q
    ||    
T  11469706 ga 11469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 14924674 - 14924782
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||  ||||||||||| ||| || |  ||||||||||| |||||||||||||||||    
T  14924674 ggtggtgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactc 14924773  T
Q  131 aacaccaga 139  Q
    |||||||||    
T  14924774 aacaccaga 14924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 31787478 - 31787586
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| ||||| | |||||| |||||||||||||| || |||| |||  |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  31787478 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacatacttttatcatagagactc 31787577  T
Q  131 aacaccaga 139  Q
    |||| ||||    
T  31787578 aacatcaga 31787586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 31788310 - 31788216
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccaga 139  Q
    |||||| | |||||||||||| || |||||||| |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  31788310 tgggaatgagaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 31788216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 38618260 - 38618334
Alignment:
Q  61 tttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacac 135  Q
    ||||| || |||||||| |||| |||||||||||||| | |||| ||||| | | ||||||||||| ||||||||    
T  38618260 tttcccaccatgggaaagttaagtttgaccattagattaagtagtgaacacattcttatcatagactctcaacac 38618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 7463444 - 7463521
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||| || ||||||||  |||||||||||||||||| |  || |||||| | |||||||||||||  |||||||||    
T  7463444 gtttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagaccatcaacacca 7463521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 7464089 - 7464012
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||| || ||||||||| ||||||||||||| |||| |  ||||||||| |  ||||||||||||  |||||||||    
T  7464089 gtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatcaacacca 7464012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 11426882 - 11426959
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||| || ||||||||  |||||||||||||||||| |  || |||||| | |||||||||||||  |||||||||    
T  11426882 gtttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagaccatcaacacca 11426959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 11427526 - 11427449
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||| |||| ||||||||| ||||||||||||| |||| |  ||||||||| |  ||||||||||||  |||||||||    
T  11427526 gttttctaccatgggaaaactaattttgaccatcagattaactagagaacacaactttatcatagaccatcaacacca 11427449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 12350703 - 12350594
Alignment:
Q  30 aggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacact 129  Q
    |||||| |||||||||||||||||||| |||||||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12350703 aggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacact 12350604  T
Q  130 caacaccaga 139  Q
    ||||||||||    
T  12350603 caacaccaga 12350594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 12349967 - 12350075
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| ||||||||||||||||||||||||||||| || |||| |||| ||||||| |||||||||||| ||| ||||||| ||||||||||||||||||    
T  12349967 ggtggcgtttaatttgggaaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactc 12350066  T
Q  131 aacaccaga 139  Q
    |||||||||    
T  12350067 aacaccaga 12350075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 43925066 - 43924958
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| ||||||||||||||||||||||||||||| || ||| |||| |||||||||||| |||||| |  ||||||||||| |||||||||||||||||    
T  43925066 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactc 43924967  T
Q  131 aacaccaga 139  Q
    |||||||||    
T  43924966 aacaccaga 43924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 43972111 - 43972026
Alignment:
Q  54 gaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccaga 139  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  43972111 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaga 43972026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 43924497 - 43924596
Alignment:
Q  38 tttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||||||||||||||||||||| || ||||||||  ||||||||||| |||||| |  ||||||||||| |||||||||| |||||||||||||    
T  43924497 tttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacacca 43924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 39257656 - 39257737
Alignment:
Q  53 ggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    ||||||||||||| || ||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  39257656 ggaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaaca 39257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 43971301 - 43971386
Alignment:
Q  54 gaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccaga 139  Q
    |||||||||||| || ||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||    
T  43971301 gaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaga 43971386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 38686342 - 38686409
Alignment:
Q  70 atgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||| | ||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  38686342 atgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactcaacacca 38686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 38687073 - 38687000
Alignment:
Q  61 tttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    ||||| || |||||||| | ||| |||| |||||||||| |||||||||||  |||||||||||||||||||||    
T  38687073 tttcccacaatgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaaca 38687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 39258452 - 39258391
Alignment:
Q  76 aaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||||||||| ||||||||||||  || |||||||||||||| | ||||||||||||||||    
T  39258452 aaattaattttaaccattagataaactaaagaacatacttttaccgtagacactcaacacca 39258391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 33801553 - 33801605
Alignment:
Q  85 ttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||| |||| |||||||||||  ||||||||||||||||||||||||    
T  33801553 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 33801605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 15183853 - 15183790
Alignment:
Q  74 gaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||| ||||||||||||||||||||| ||||| |||||  |||||||| |||||||||| ||||    
T  15183853 gaaagttaattttgaccattagataaagtagaaaacatgattttatcacagacactcaaaacca 15183790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 33802391 - 33802318
Alignment:
Q  61 tttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    ||||| || |||||||| | ||| |||||||||| ||||  ||||||||||  |||||||||||||||||||||    
T  33802391 tttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 40451036 - 40450968
Alignment:
Q  29 gaggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagat 97  Q
    ||||||| ||||| | ||||||| | ||||||||||| || |||||||| | |||||| ||||||||||    
T  40451036 gaggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaagtaaattttaaccattagat 40450968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 6246784 - 6246934
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6246784 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactc 6246883  T
Q  131 aacaccagannnnnnnn--ccatattggcccaccacttgcagctgtcccaa 179  Q
    |||| ||            ||||||||||||||||||||||||||||||||    
T  6246884 aacatcattttttttttttccatattggcccaccacttgcagctgtcccaa 6246934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 6247519 - 6247410
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatac-ttttatcatagacact 129  Q
    ||||| ||||||||||||||||||||||||||||  |  ||||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  6247519 ggtggcgtttaatttgggaaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacact 6247420  T
Q  130 caacaccaga 139  Q
    ||||||||||    
T  6247419 caacaccaga 6247410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 10421623 - 10421521
Alignment:
Q  37 gtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacc 136  Q
    ||||||||||||||||||||||||||| | || ||||||||  ||||||||||| |||||| |  ||||||||||| |||||||||||||||||||||||    
T  10421623 gtttaatttgggaaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacacc 10421524  T
Q  137 aga 139  Q
    |||    
T  10421523 aga 10421521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 15481612 - 15481510
Alignment:
Q  37 gtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacc 136  Q
    |||||||||| |||||||||||||||||| || ||||||||| |||||||||||  ||||| |  ||||||||||| |||||||||||| ||||||||||    
T  15481612 gtttaatttgcgaaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacatatttttatcatagaaactcaacacc 15481513  T
Q  137 aga 139  Q
    |||    
T  15481512 aga 15481510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 10420966 - 10421064
Alignment:
Q  80 taattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagannnnnnnnccatattggcccaccacttgcagctgtcccaa 179  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||| |||||    
T  10420966 taattttgaccattagataaactagataacatacttttatcatagacactcaacaccaga-tttttttccatattgacccaccacttgcagctgccccaa 10421064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 15481041 - 15481141
Alignment:
Q  37 gtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacc 136  Q
    |||||||||||| ||||||||||||||||    ||||||||  ||||||||||| |||||| |  ||||||||||| ||||||||||||| |||||||||    
T  15481041 gtttaatttggggaagggaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagactctcaacacc 15481140  T
Q  137 a 137  Q
    |    
T  15481141 a 15481141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 50709713 - 50709765
Alignment:
Q  85 ttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  50709713 ttgactattagataaagtagagaacatagttttatcatagacactcaacacca 50709765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 50710435 - 50710359
Alignment:
Q  61 tttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||| || |||||||| | ||| ||||||||||||||| |||||||||||   |||||||||||||||||||||||    
T  50710435 tttcccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaacacca 50710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 45331484 - 45331395
Alignment:
Q  48 gaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||||| |||||||||| || ||| |||| |||| |||||||||||||| | |||  ||||| | | ||||||||||||||||||||||    
T  45331484 gaaaggggagttgtttcccaccatgagaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 45331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 53664242 - 53664315
Alignment:
Q  61 tttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    ||||| || |||||||| | ||| |||||||||||||||  ||||||||||  |||||||||||||||||||||    
T  53664242 tttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 232097 - 232029
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataa 99  Q
    ||||| ||||| | ||||||||||||||||||||| || |||||||| | |||||| ||||||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataa 232029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 53665080 - 53665028
Alignment:
Q  85 ttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||| |||| |||||||||||  ||||||||||||||||||||||||    
T  53665080 ttgaccattaaataaagtagagaacatggttttatcatagacactcaacacca 53665028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 13856645 - 13856687
Alignment:
Q  85 ttgaccattagataaggtagagaacatacttttatcatagaca 127  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  13856645 ttgaccattagataaagtagagaacatacctttatcatagaca 13856687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 30808635 - 30808724
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    |||||||||  |||||||||| || |||||||| |||| |||||||||||||| | |||  ||| | | | |||||||||||||||||||    
T  30808635 tgggaaaggagagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaatacattcttatcatagacactcaaca 30808724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 30809539 - 30809447
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||| |||||||| | || ||| |||| |||| |||||||| ||||| | |||  ||||| | ||||||||||||| ||||||||||    
T  30809539 tgggaaaggggagttgttttccaccatgagaaagttaaatttgaccactagattaagtaatgaacacatttttatcatagactctcaacacca 30809447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 34956313 - 34956388
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacac 135  Q
    |||||| | ||| ||||| |||||||||||| |||||| | ||| |||||| | ||||||||||||| ||||||||    
T  34956313 gtttcccattataggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacac 34956388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 6680376 - 6680286
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacac 135  Q
    ||||||||||||   |||||  || |||||||| | ||| ||||||||||||| | ||| |||||||| ||||||||||||  ||||||||    
T  6680376 tgggaaagggaaagagtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacac 6680286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 34957057 - 34956983
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    |||||||||||||| ||| |||||||||| | |||||| | ||| |||||||| ||||| ||| ||| |||||||    
T  34957057 gtttcctactatggaaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaaca 34956983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 50709034 - 50709096
Alignment:
Q  73 ggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacac 135  Q
    ||||| |||||||||||| |||||| | ||| |||||| | ||||||||||||| ||||||||    
T  50709034 ggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacac 50709096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 231435 - 231503
Alignment:
Q  30 aggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataa 99  Q
    |||||| ||||| | ||||||||||||||||||| |||| ||||| ||| |||||||  |||||||||||    
T  231435 aggtggggtttagtatgggaaagggaagttgttttctaccatggg-aaagtaattttatccattagataa 231503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 45330579 - 45330671
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||| |||||||||| || |||| ||| |||| |||||||| ||||| | |||  ||| | | | ||||||||||| ||||||||||    
T  45330579 tgggaaaggggagttgtttcccaccatggaaaagttaaatttgaccactagattaagtaatgaatacattcttatcatagactctcaacacca 45330671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 12907 - 12760
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| |||||||||||| ||| |||||||||||| || |||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12907 ggtggcgtttaatttggggaagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactc 12808  T
Q  131 aacaccagannnnnnnnccatattggcccaccacttgcagctgtcccaa 179  Q
    |||||||          |||||||||||||||||||||||||| |||||    
T  12807 aacacca-tttttttttccatattggcccaccacttgcagctgccccaa 12760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 12184 - 12292
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| |||||||||||||||| |||||||||||| || ||| ||||||||||||||||| |||||| |  ||||||||||| |||||||||||||||||    
T  12184 ggtggcgtttaatttgggaaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactc 12283  T
Q  131 aacaccaga 139  Q
    |||| ||||    
T  12284 aacatcaga 12292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 38337526 - 38337417
Alignment:
Q  30 aggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacact 129  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||||  ||||||||||| |||||| |  ||||||||||| ||||||||||||||||    
T  38337526 aggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacact 38337427  T
Q  130 caacaccaga 139  Q
    ||||||||||    
T  38337426 caacaccaga 38337417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 38336951 - 38337048
Alignment:
Q  38 tttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||||||||| |||||||||||||||| || ||||||||  ||||||||||| |||||| |  ||||||||||| |||||||  |||||||||||||||    
T  38336951 tttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatc--agacactcaacacca 38337048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 49287694 - 49287793
Alignment:
Q  38 tttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||| | ||||||  |||||||||||||||||||||||||||||||  ||  |||||| | ||| |||||||| | |||||||| || ||||||||||    
T  49287694 tttaatataggaaagtaaagttgtttcctactatgggaaaattaatttaaacggttagattaagtatagaacatagtcttatcatacactctcaacacca 49287793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 15450240 - 15450318
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatag 124  Q
    ||||||||||||   |||||| || |||||||| ||||| ||||||||||||| | |||||||||||| |||||||||||    
T  15450240 tgggaaagggaaagagtttcc-accatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 55124428 - 55124517
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    ||||||||||||   |||||| || |||||||||| ||| ||||| ||||||| | ||| |||||||| ||||||||||||  |||||||    
T  55124428 tgggaaagggaaagagtttcccaccatgggaaaataaatattgactattagatcatgtaaagaacatagttttatcatagattctcaaca 55124517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 27452637 - 27452689
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagat 97  Q
    |||||||||||| | ||||||||| |||| |||||||| ||||||||||||||    
T  27452637 tgggaaagggaaatagtttcctaccatggaaaaattaaatttgaccattagat 27452689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 42108370 - 42108404
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcc 65  Q
    ||||| |||||||||||||||||||||||||||||    
T  42108370 ggtggcgtttaatttgggaaagggaagttgtttcc 42108404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 33968195 - 33968247
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagat 97  Q
    |||||||||||| |||||||| || ||||||||||   |||||||||||||||    
T  33968195 tgggaaagggaacttgtttcccaccatgggaaaatattttttgaccattagat 33968247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 44022110 - 44022031
Alignment:
Q  56 agttgtttcctactatgggaaaattaattttgaccattagat-aaggtagagaacatacttttatcatagacactcaacac 135  Q
    |||||||| | || |||||||||  || |||||||||||||| ||  ||| |||||||||||||||||| |||||||||||    
T  44022110 agttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacatacttttatcatacacactcaacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 4555423 - 4555290
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagannnnn 144  Q
    |||||||||||||||||||||||| ||||||||  ||||||||| | || ||||| || ||||||||||||||||| |||||||||||||||| |         
T  4555423 tgggaaagggaagttgtttcctaccatgggaaagctaattttgaacgttggataaagtggagaacatacttttatcgtagacactcaacacca-attttt 4555325  T
Q  145 nnnccatattggcccaccacttgcagctgtcccaa 179  Q
       ||||||||||||||| ||||||||||||||||    
T  4555324 tttccatattggcccaccgcttgcagctgtcccaa 4555290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 4554656 - 4554764
Alignment:
Q  30 aggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacact 129  Q
    |||||| ||||| | ||||||||| || |||||| | || ||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4554656 aggtggggtttagtatgggaaaggaaaattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacact 4554755  T
Q  130 caacaccag 138  Q
    |||||||||    
T  4554756 caacaccag 4554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 6804858 - 6804775
Alignment:
Q  54 gaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||||| || |||||||| | ||||||||||||||||| ||||| |||||| |   ||||||||| | ||||||||||    
T  6804858 gaagttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacacca 6804775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 4789534 - 4789624
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacac 135  Q
    |||||||||| |||||||||| || |||||||| ||| | ||||||||||||| |  | ||||||||  |||||| ||| || ||||||||    
T  4789534 tgggaaaggggagttgtttcccaccatgggaaagttattcttgaccattagatcaaatggagaacatgattttattataaaccctcaacac 4789624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 26712422 - 26712357
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaaca 110  Q
    ||||||||||||||||||||| || ||||||||  ||||||| ||||| |||| | ||| ||||||    
T  26712422 tgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaaca 26712357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 26982160 - 26982095
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaaca 110  Q
    ||||||||||||||||||||| || ||||||||  ||||||| ||||| |||| | ||| ||||||    
T  26982160 tgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaaca 26982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 35262466 - 35262518
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagat 97  Q
    |||||||||  | ||||||||||| |||||||| ||| |||||||||||||||    
T  35262466 tgggaaaggataattgtttcctaccatgggaaagttatttttgaccattagat 35262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 4976530 - 4976447
Alignment:
Q  54 gaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  4976530 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4976447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 4994437 - 4994354
Alignment:
Q  54 gaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  4994437 gaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 4994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 4975696 - 4975804
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| ||||| | |||||| |||||||||||||| || |||| |||  ||||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  4975696 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4975795  T
Q  131 aacaccaga 139  Q
    |||| ||||    
T  4975796 aacatcaga 4975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 4993604 - 4993712
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| ||||| | |||||| |||||||||||| | || |||| |||  ||||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  4993604 ggtggcgtttagtatgggaatgggaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactc 4993703  T
Q  131 aacaccaga 139  Q
    |||| ||||    
T  4993704 aacatcaga 4993712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 41519959 - 41519867
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||||||||||||| ||||| || |||||||| ||  |||||||| ||| |||| |||||||||||||||||| ||||||||| ||||||||    
T  41519959 tgggaaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacacca 41519867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 37545692 - 37545782
Alignment:
Q  47 ggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||||||||||||||||| || |||||||| |||| |||||||||||||| | |||  ||||| | | ||||||||||||||||||||||    
T  37545692 ggaaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 37545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 8536904 - 8536828
Alignment:
Q  61 tttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||| |||| ||| | ||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  8536904 tttcctaccatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatcatagacactcaacacca 8536828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 42369643 - 42369749
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactc 130  Q
    ||||| ||||| | ||| ||||| ||||||||||   | |||||||| | ||| ||  ||||||||||| |||||||||||| |||||||||||||||||    
T  42369643 ggtggggtttagtatggaaaaggaaagttgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataattttatcatagacactc 42369742  T
Q  131 aacacca 137  Q
    |||||||    
T  42369743 aacacca 42369749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 42370984 - 42370892
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||| || ||||||||||| || |||||||| | ||| ||| ||||||||||| || ||||| ||| ||||||||||||||||| ||||||    
T  42370984 tgggaatggaaagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacactcgacacca 42370892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 8536176 - 8536240
Alignment:
Q  70 atgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    |||||||| | ||| ||||| ||||||||| |||||||||||  |||||||||||||||||||||    
T  8536176 atgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaaca 8536240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 41768768 - 41768685
Alignment:
Q  54 gaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||||| || |||||||| | ||||||||||||||||| ||||| |||||| |   ||||||||| | ||||||||||    
T  41768768 gaagttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaacacatagttatcatagtctctcaacacca 41768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 36390971 - 36391023
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagat 97  Q
    ||||||||||||||||||||| || |||||||| | |||||| ||||||||||    
T  36390971 tgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagat 36391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 30545476 - 30545417
Alignment:
Q  38 tttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagat 97  Q
    |||||||||||||||||||||||||||| |  |||||||| ||  |||| ||||||||||    
T  30545476 tttaatttgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagat 30545417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 15602852 - 15602802
Alignment:
Q  47 ggaaagggaagttgtttcctactatgggaaaattaattttgaccattagat 97  Q
    ||||||||||||||||||| || ||||||||||   |||||||||||||||    
T  15602852 ggaaagggaagttgtttcccaccatgggaaaatattttttgaccattagat 15602802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 1271247 - 1271299
Alignment:
Q  47 ggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataa 99  Q
    ||||||| ||||||||| | |||||||||||| ||||||| ||| ||||||||    
T  1271247 ggaaaggaaagttgttttccactatgggaaaactaattttaaccgttagataa 1271299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 41985940 - 41985908
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgttt 63  Q
    ||||| |||||||||||||||||||||||||||    
T  41985940 ggtggcgtttaatttgggaaagggaagttgttt 41985908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 27763420 - 27763521
Alignment:
Q  38 tttaatttgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    ||||||||||| |||||||||||||||| || | ||||||| ||||||||||| |||||| |  ||||||||||| |||||||| |||||||||||||||    
T  27763420 tttaatttggggaagggaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacatatttttatcaaagacactcaacacca 27763519  T
Q  138 ga 139  Q
    ||    
T  27763520 ga 27763521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 46757438 - 46757530
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||| | |||||||| | || ||| |||| | ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  46757438 tgggaaagaggagttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacacca 46757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 27599225 - 27599317
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||| |||||||||| || |||||||| |||| |||||||||||||| | |||  ||||| | | ||||||||||||||||||||||    
T  27599225 tgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcatagacactcaacacca 27599317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 12732261 - 12732350
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    ||||||||||||   |||||| || |||||||| | ||| ||||||||||||| | ||| |||||||| ||||||||||||| |||||||    
T  12732261 tgggaaagggaaagagtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 27600129 - 27600037
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacacca 137  Q
    |||||||||| |||||||||| || |||||||| |||| |||||||| ||||| | |||  ||||| | | ||||||||||| ||||||||||    
T  27600129 tgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacacattcttatcatagactctcaacacca 27600037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 40905060 - 40905134
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    |||||||||||||||||| |||||||||| | |||||| | ||| |||||||| ||||| ||| ||| |||||||    
T  40905060 gtttcctactatgggaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaaca 40905134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 46759296 - 46759202
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccaga 139  Q
    |||||||||| |||||||||| |  || | |||  |||| ||||||||||||||| ||||||||||||||| ||| ||| | ||| |||||||||    
T  46759296 tgggaaaggggagttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatacttctattatacatacttaacaccaga 46759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 46756270 - 46756302
Alignment:
Q  31 ggtggtgtttaatttgggaaagggaagttgttt 63  Q
    ||||| |||||||||||||||||||||||||||    
T  46756270 ggtggcgtttaatttgggaaagggaagttgttt 46756302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 11951 - 11873
Alignment:
Q  45 tgggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatag 124  Q
    ||||||||||||   |||||| || |||||||| ||||| ||||||||||||| | |||||||||||| |||||||||||    
T  11951 tgggaaagggaaagagtttcc-accatgggaaagttaatcttgaccattagattaagtagagaacatatttttatcatag 11873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 44958 - 44884
Alignment:
Q  60 gtttcctactatgggaaaattaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 134  Q
    |||||||||||||||||| |||||||||| | |||||| | ||| |||||||| ||||| ||| ||| |||||||    
T  44958 gtttcctactatgggaaagttaattttgatccttagatcaagtaaagaacatatttttaccatggactctcaaca 44884  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 29990 - 29938
Alignment:
Q  47 ggaaagggaagttgtttcctactatgggaaaattaattttgaccattagataa 99  Q
    ||||||| ||||||||| | |||||||||||| ||||||| ||| ||||||||    
T  29990 ggaaaggaaagttgttttccactatgggaaaactaattttaaccgttagataa 29938  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 36664 - 36620
Alignment:
Q  55 aagttgtttcctactatgggaaaattaattttgaccattagataa 99  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||||    
T  36664 aagttgtttcccactatgggaaaactaattttgactgttagataa 36620  T

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