View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_low_3 (Length: 771)
Name: NF12239_low_3
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 708; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 8 - 764
Target Start/End: Original strand, 47010264 - 47011020
Alignment:
| Q |
8 |
gcagaacctgtggatcaggaaaaaagaaataagtttcatgaagatgaagatttgacaattgcagatatgaacagaaagggaaccgtattcacacaccttg |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47010264 |
gcagaatctgtggatcaggaaaaaagaaataagtttcatgaagatgaagatttgacaattgcagatatgaacaaaaagggaaccgtattcacacaccttg |
47010363 |
T |
|
| Q |
108 |
catgaagttactgtaccaaactcggagaagagttcgctaagtttttcatcagtgacgctatcatccaagttcttgagatacaagtttgcaccataaaact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47010364 |
catgaagttactgtaccaaactcggagaagagttcgctaagtttttcatcagtgacgctatcatccaagttcttgagatacaagtttgcaccataaaact |
47010463 |
T |
|
| Q |
208 |
tgtcaacagtttccttcatactctgctcgtgtctttctttcagctcaagctccctttcatannnnnnnagggcttttccaacataccactccttgtcatc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47010464 |
tgtcaacagtttccttcatactctgctcgtgtctttctttcagctcaagctccctttcatatttttttagggcttttccaacataccactccttgtcatc |
47010563 |
T |
|
| Q |
308 |
aaatttctttccattgagtgcctccacagcttcagcagcagcatctgcattttcaaaattgacaaaaccaaaacattttgatttaccatctacatctctc |
407 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47010564 |
aaatttctttccattgagtgcctccacggcttcagcagcagcatctgcattttcaaaattgacaaaaccaaaacattttgatttaccatctacatctctc |
47010663 |
T |
|
| Q |
408 |
attactacagcactagtaatagttccatattctccaaaagtgttcttcaagtcatcatctgtaaccaattctgataggtttttcacatagacattgttaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47010664 |
attactacagcactagtaatagttccatattctccaaaagtgttcttcaagtcatcatctgtaaccgattctgataggtttttcacatagacattgttaa |
47010763 |
T |
|
| Q |
508 |
acttcgcattactcaaagcgttatctctatcctgcttcctctggaaatgaccaacgtagaccggtttatcgttgagcagcatgccatttaacttgtcaat |
607 |
Q |
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| T |
47010764 |
acttcgcattactcaaagcgttatctctatcctgcttcctctggaaatgaccaacgtagaccggtttatcgttgagcagcatgccatttaacttgtcaat |
47010863 |
T |
|
| Q |
608 |
tgcactttgtgcagattcttcattctcaaattgcacaaaaccgtagcctttagacagaccagaagcatccattgctatcttgcaagaaaggatatttcca |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47010864 |
tgcactttgtgcagattcttcattctcaaattgcacaaaaccgtagcctttagacagaccagaagcatccattgctatcttgcaagaaaggatatttcca |
47010963 |
T |
|
| Q |
708 |
aaaatcgaaaaggtatcatataaagctttatgatcaattgacctgcacaggttctgc |
764 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
47010964 |
aaaatcgaaaaggtatcatataaagctttatgatcaattgccctgtccaggttctgc |
47011020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 99 - 747
Target Start/End: Complemental strand, 5710701 - 5710050
Alignment:
| Q |
99 |
cacaccttgcatgaagttactgtaccaaactcggagaagagttcgctaagtttttcatcagtgacgctatcatccaagttcttgagatacaagtttgcac |
198 |
Q |
| |
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||||||||| ||||||| | ||| |||||||||||||| | ||| | |||||||||||||| | | ||||||||||||||||||||||||||| || |
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| T |
5710701 |
cacaccttgtatgaagtaattgtgccaaactcggagaacatttccttgagtttttcatcagtaatggaatcatccaagttcttgagatacaagttcagac |
5710602 |
T |
|
| Q |
199 |
cataaaacttgtcaac---agtttccttcatactctgctcgtgtctttctttcagctcaagctccctttcatannnnnnnagggcttttccaacatacca |
295 |
Q |
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| | ||| ||||| || || |||||| | | |||||||| | | |||||||||| |||| | |||| | ||||||| ||||||||||| |
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| T |
5710601 |
cttgaaatttgtctactacagattcctttacagtctgctcgaaccgtcctttcagctcttgctcacgttcagattttttctgggctttaccaacatacca |
5710502 |
T |
|
| Q |
296 |
ctccttgtcatcaaatttctttccattgagtgcctccacagcttcagcagcagcatctgcattttcaaaattgacaaaaccaaaacattttgatttacca |
395 |
Q |
| |
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|||||||| |||| || || ||||| | |||||| ||||||| ||||||| | ||||||||||||||||||||||| |||||||| || || ||||| |
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|
| T |
5710501 |
ttccttgtcgtcaacctttttaccatttaatgcctcaacagctttagcagcatcttctgcattttcaaaattgacaaatccaaaacacttcgacctacca |
5710402 |
T |
|
| Q |
396 |
tctacatctctcattactacagcactagtaatagttccatattctccaaaagtgttcttcaagtcatcatctgtaaccaattctgataggtttttcacat |
495 |
Q |
| |
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|| |||||||||| | |||||||||||||| || ||||| ||||||| || ||||||||||| || |||| | ||||||||||||||||||| |
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| T |
5710401 |
tcagcatctctcatcaaaacagcactagtaatggtcccataagctccaaattcatttttcaagtcatcttccgtaaatgactctgataggtttttcacat |
5710302 |
T |
|
| Q |
496 |
agacattgttaaacttcgcattactcaaagcgttatctctatcctgcttcctctggaaatgaccaacgtagaccggtttatcgttgagcagcatgccatt |
595 |
Q |
| |
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||||||||||||| || | ||||| | | ||||||||||||| ||||| | |||||||||| || | ||| | || || |||| |||||| ||||| |
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|
| T |
5710301 |
agacattgttaaattttgtcttactgagaacgttatctctatcttgcttacgtaggaaatgacccacaaacacctgcttgtcattgatcagcattccatt |
5710202 |
T |
|
| Q |
596 |
taacttgtcaattgcactttgtgcagattcttcattctcaaattgcacaaaaccgtagcctttagacagaccagaagcatccattgctatcttgcaagaa |
695 |
Q |
| |
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|||||| ||||||||| | || ||||| || ||| ||||||||| |||||||| |||||||||||| |||||||| |||| ||||||| |||||||| |
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| T |
5710201 |
taacttatcaattgcattctgagcagaatcctcagcctcaaattggacaaaaccatagcctttagactgaccagaaccatcagttgctattttgcaagac |
5710102 |
T |
|
| Q |
696 |
aggatatttccaaaaatcgaaaaggtatcatataaagctttatgatcaattg |
747 |
Q |
| |
|
| || | ||| ||| ||||| || |||| ||||||||| |||||||||| |
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|
| T |
5710101 |
ataatttgtccgaaagaagaaaaagtgtcatgtaaagctttgtgatcaattg |
5710050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 279 - 463
Target Start/End: Complemental strand, 33420194 - 33420010
Alignment:
| Q |
279 |
gcttttccaacataccactccttgtcatcaaatttctttccattgagtgcctccacagcttcagcagcagcatctgcattttcaaaattgacaaaaccaa |
378 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| || ||||| || ||||| |||||| ||||||| |||| | | | ||||| || ||||| |||| |
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| T |
33420194 |
gcttttccaacataccattccttgtcatcaatttttttcccattaagagcctcaacagctctagcagcatcatcggtactctcaaagttcacaaatccaa |
33420095 |
T |
|
| Q |
379 |
aacattttgatttaccatctacatctctcattactacagcactagtaatagttccatattctccaaaagtgttcttcaagtcatc |
463 |
Q |
| |
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| || |||||||| ||||| |||| ||||||||||||||||| ||||| |||||| |||| |||||||| |||||||| ||||| |
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| T |
33420094 |
agcactttgatttcccatccccatccctcattactacagcactggtaattgttccaaattcaccaaaagtcttcttcaactcatc |
33420010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 726
Target Start/End: Complemental strand, 33419840 - 33419747
Alignment:
| Q |
633 |
tcaaattgcacaaaaccgtagcctttagacagaccagaagcatccattgctatcttgcaagaaaggatatttccaaaaatcgaaaaggtatcat |
726 |
Q |
| |
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|||||||| ||||| ||||||||||| || | ||||| |||||| |||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
33419840 |
tcaaattgaacaaagccgtagccttttgattggccagatccatccacagctaccttgcaagaaaggatattcccaaatgaagaaaaggtatcat |
33419747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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