View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12239_low_9 (Length: 373)
Name: NF12239_low_9
Description: NF12239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12239_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 396015 - 395678
Alignment:
| Q |
17 |
gagagaatcgaattgaggaggaacacactcccatatgccaagccaataccataggccgaacattgtttttatcttattctcgtaagttcttcataactgt |
116 |
Q |
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| T |
396015 |
gagagaatcgaattgaggaggaacacactcccatatgccaagccaataccataggccaaacattgtttttatcttattctggtaagttcttcataactgt |
395916 |
T |
|
| Q |
117 |
ttacnnnnnnngtatatagcttataatgttcaaactctattttcttattcttattcatttccatttccacttccccctaaaaccatataaccatgacact |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
395915 |
ttacaaaaaaagtatatagcttataatgttcaaactctattttcttattcttattcatttccatttccacttccccctaaaaccatataaccatgacact |
395816 |
T |
|
| Q |
217 |
cgaatctctcaaaaccctactgaaatctctctgnnnnnnnncttcccatcaaaacaacttccgtaatatctatcacattagatgtttgtctaaataaggc |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
395815 |
cgaatctctcaaaaccctactgaaatctctct--tttttttcttcccatcaaaacaacttccgtaatatctatcacattagatgtttgtctaaataaggc |
395718 |
T |
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| Q |
317 |
ctaaagttattgatcaagccgaaatatgatatttcattgt |
356 |
Q |
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| T |
395717 |
ctaaagttattgatcaagccgaaatatgatatttcattgt |
395678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 30483902 - 30483939
Alignment:
| Q |
30 |
tgaggaggaacacactcccatatgccaagccaatacca |
67 |
Q |
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| T |
30483902 |
tgaggaggagcacactcccatatcccaagccaatacca |
30483939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 36720438 - 36720402
Alignment:
| Q |
31 |
gaggaggaacacactcccatatgccaagccaatacca |
67 |
Q |
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| T |
36720438 |
gaggaggagcacactcccatatcccaagccaatacca |
36720402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 23140928 - 23140968
Alignment:
| Q |
28 |
attgaggaggaacacactcccatatgccaagccaataccat |
68 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
23140928 |
attgaggaggaacacacacccatgtcccaagccaataccat |
23140968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 23552718 - 23552758
Alignment:
| Q |
28 |
attgaggaggaacacactcccatatgccaagccaataccat |
68 |
Q |
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| T |
23552718 |
attgaggaggaacacacacccatgtcccaagccaataccat |
23552758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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