View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12240_high_1 (Length: 489)
Name: NF12240_high_1
Description: NF12240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12240_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 199 - 473
Target Start/End: Complemental strand, 2321972 - 2321682
Alignment:
| Q |
199 |
tttagctaggacatacatttcttctttttcttcagtcgaccaaaataaaacaactttgatattacaaaaacaagatcatattttttatacattgaaagta |
298 |
Q |
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| T |
2321972 |
tttagctaggacatacatttcttctttttcttcagtcgaccaaaataaaacaactttgatattacaaaaacaagatcatattttttatacattgaaagta |
2321873 |
T |
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| Q |
299 |
tcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaagtaagg--gatcattgt--------------attgtatg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||| |
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| T |
2321872 |
tcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaagtaaggcatatgaatgtatgcataagggatcattgtatg |
2321773 |
T |
|
| Q |
383 |
aaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacac |
473 |
Q |
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| T |
2321772 |
aaacaaaatccgaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacac |
2321682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 2322224 - 2322015
Alignment:
| Q |
11 |
ctgtggattttgttattaagaaaatcatgaagtaccatttcattctggccataactctattctatgcatcacttctgcacactcaaaattacaagttaca |
110 |
Q |
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| T |
2322224 |
ctgtggatcttgttattaagaaaatcatgaagtaccatttcattctggccataactctattctatgcatcacttcagcacactcaaaattacaagttaca |
2322125 |
T |
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| Q |
111 |
accctataatttaagaccacagatgtttagggaggaaacataatctatattgtatgagacactatgatcctaaacataatttccctgttttagctaggac |
210 |
Q |
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| T |
2322124 |
accctataatttaagaccacagatgtttagggaggaaacataatctatattgtatgagacactatgatcctaaacataatttccctgttttagctaggac |
2322025 |
T |
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| Q |
211 |
atacatttct |
220 |
Q |
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|||||||||| |
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| T |
2322024 |
atacatttct |
2322015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 2294793 - 2294657
Alignment:
| Q |
23 |
ttattaagaaaatcatgaagtaccatttcattctggccataactctattctatgcatcacttctgcacactcaaaattacaagttacaaccctataattt |
122 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2294793 |
ttattaagaaaatcatgaagcaccatttcactttggccataactctattctatgcatcacttctgcacactcaaaattacaagttacaaccctataattt |
2294694 |
T |
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| Q |
123 |
aagaccacagatgtttagggaggaaacataatctata |
159 |
Q |
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| T |
2294693 |
aagaccacagatgtttagggaggaaacataatctata |
2294657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 473
Target Start/End: Complemental strand, 2294464 - 2294370
Alignment:
| Q |
379 |
tatgaaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacac |
473 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2294464 |
tatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatgacattctcaagcagagaatctagggtggttcacac |
2294370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 2304534 - 2304461
Alignment:
| Q |
11 |
ctgtggattttgttattaagaaaatcatgaagtaccatttcattctggccataactctattctatgcatcactt |
84 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
2304534 |
ctgtggatcttgttattaagaaaatcatgaagcaccatttcactttggccataactctattctatgcatcactt |
2304461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 2304046 - 2303978
Alignment:
| Q |
405 |
aaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacac |
473 |
Q |
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| T |
2304046 |
aaatccacatataatatttctttgctgtgttatgacattctcaagcagagaatctagagtggttcacac |
2303978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 2294633 - 2294512
Alignment:
| Q |
239 |
caaaataaaacaactttgatattacaaaaacaa-gatcatattttttatacattgaaagtatcttgacttacaagaatgacagac-atgttttattttat |
336 |
Q |
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||||||||| |||||| ||||||| | ||||| |||||||| |||| |||| |||||||||||||||||||||||||||||| | | ||||| ||||| |
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| T |
2294633 |
caaaataaaccaacttcaatattactacaacaaagatcatatatttt-tacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttat |
2294535 |
T |
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| Q |
337 |
acaagaaacaagatatataagaa |
359 |
Q |
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||| ||||||||||||||||||| |
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| T |
2294534 |
acaggaaacaagatatataagaa |
2294512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 2339375 - 2339306
Alignment:
| Q |
289 |
attgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa |
359 |
Q |
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||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
2339375 |
attgaaagtatcttg-cttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaa |
2339306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 2331656 - 2331566
Alignment:
| Q |
125 |
gaccacagatgtttagggaggaaacataatctatattgtatgagacactatgatcctaaacataatttccctgttttagctaggacatacatt |
217 |
Q |
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||||||| |||||||||||||| || |||||||||||||||||| | ||| | |||||||||||||||| || | |||||||||||||||| |
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| T |
2331656 |
gaccacaaatgtttagggaggatgcacaatctatattgtatgagatattataaacctaaacataatttcc--gtctcagctaggacatacatt |
2331566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 2304278 - 2304241
Alignment:
| Q |
322 |
catgttttattttatacaagaaacaagatatataagaa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2304278 |
catgttttattttatacaagaaacaagatatataagaa |
2304241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 2331484 - 2331412
Alignment:
| Q |
287 |
acattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa |
359 |
Q |
| |
|
|||||||| |||||||| ||| |||||| | || |||||||||||||||| |||||||||||||| |||||| |
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| T |
2331484 |
acattgaatgtatcttggcttgcaagaaggtcatgcatgttttattttatataagaaacaagatatgtaagaa |
2331412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 2332315 - 2332248
Alignment:
| Q |
64 |
actctattctatgcatcacttctgcacactcaaaattacaagttacaaccctataatttaagaccacagat |
134 |
Q |
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|||||||||| ||||||| |||||||| |||||||||||| |||||||||| || |||||||||||||| |
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| T |
2332315 |
actctattctttgcatcatttctgcac--tcaaaattacaaattacaaccct-gaaattaagaccacagat |
2332248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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