View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12240_high_4 (Length: 203)
Name: NF12240_high_4
Description: NF12240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12240_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 6247402 - 6247218
Alignment:
| Q |
3 |
ccacactcaccactctcattcaacaccagattttctccctctcattcaaaccttatcatctcaggaaaattgattttgtatccaatttgctacaaatgac |
102 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6247402 |
ccacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttatcagctcaggaaaattgattttgtatccaatttgctacaaatgaa |
6247303 |
T |
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| Q |
103 |
aaatttattacccaactctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataac |
187 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6247302 |
aaatttgctacccaactctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataac |
6247218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 22499771 - 22499730
Alignment:
| Q |
141 |
tctctacaaatgacaaataattaaacataaataaattaaaac |
182 |
Q |
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| T |
22499771 |
tctctacaagtgacaaataattaaacatgaataaattaaaac |
22499730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 12350081 - 12350267
Alignment:
| Q |
1 |
tcccacactcaccactctcattcaacaccagattttctccctctcattcaaaccttatcatctcaggaaaattgattttgtatccaatttgctacaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| |
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| T |
12350081 |
tcccacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttataagcttaggaaaattgattttgtatccaatttgctacaaatg |
12350180 |
T |
|
| Q |
101 |
acaaatttattacccaactctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataac |
187 |
Q |
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| T |
12350181 |
acaaatttgctacccaactctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataac |
12350267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 11469699 - 11469513
Alignment:
| Q |
1 |
tcccacactcaccactctcattcaacaccagattttctccctctcattcaaaccttatcatctcaggaaaattgattttgtatccaatttgctacaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| |
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| T |
11469699 |
tcccacactcaccactctcattcaacaccagattttcttcctctcattcaaaccttattagcttaggaaaattgattttgtatccaatttgctacaaatg |
11469600 |
T |
|
| Q |
101 |
acaaatttattacccaactctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataac |
187 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11469599 |
acaaatttgctacccaactctctttcttcccgtttctgtttctctacaaatgacaaataattaaacataaataaattaaaacataac |
11469513 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 4554993 - 4555041
Alignment:
| Q |
139 |
tttctctacaaatgacaaataattaaacataaataaattaaaacataac |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4554993 |
tttctctacaaatgacaaataattaaacataaataaattaaaacataac |
4555041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 4554820 - 4554865
Alignment:
| Q |
34 |
tttctccctctcattcaaaccttatcatctcaggaaaattgatttt |
79 |
Q |
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||||| ||||||||||||||||||||| | |||||||||||||||| |
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| T |
4554820 |
tttcttcctctcattcaaaccttatcagcccaggaaaattgatttt |
4554865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 34034419 - 34034460
Alignment:
| Q |
141 |
tctctacaaatgacaaataattaaacataaataaattaaaac |
182 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
34034419 |
tctctacaagtgacaaataattaaacatgaataaattaaaac |
34034460 |
T |
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