View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12240_low_11 (Length: 208)
Name: NF12240_low_11
Description: NF12240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12240_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 32565407 - 32565581
Alignment:
| Q |
18 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565407 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
32565506 |
T |
|
| Q |
118 |
gaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
192 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565507 |
gaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32565581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 32806592 - 32806766
Alignment:
| Q |
18 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32806592 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
32806691 |
T |
|
| Q |
118 |
gaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
192 |
Q |
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| T |
32806692 |
gaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32806766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 32799640 - 32799812
Alignment:
| Q |
20 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799640 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
32799739 |
T |
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| Q |
120 |
aattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
192 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799740 |
aattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32799812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 32815031 - 32815203
Alignment:
| Q |
20 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815031 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
32815130 |
T |
|
| Q |
120 |
aattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
192 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815131 |
aattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32815203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 32309426 - 32309254
Alignment:
| Q |
20 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32309426 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatcttcagcttgagggcaagaatccctataga |
32309327 |
T |
|
| Q |
120 |
aattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
192 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309326 |
aattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32309254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 28215639 - 28215796
Alignment:
| Q |
18 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |
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| T |
28215639 |
agagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatattctcagcttcagggcaagaatccttata |
28215738 |
T |
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| Q |
118 |
gaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaa |
175 |
Q |
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|||||||||| ||||||||||||||||||||| |||| | |||||||||| |||||| |
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| T |
28215739 |
gaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaa |
28215796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 28220584 - 28220448
Alignment:
| Q |
18 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
117 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
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| T |
28220584 |
agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatattctcagcttgagggcaagaaaccttata |
28220486 |
T |
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| Q |
118 |
gaaattatattcaagattggaaccatctctgattcttt |
155 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
28220485 |
gaaattatattgaagattggaaccatctctgattcttt |
28220448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 28220356 - 28220316
Alignment:
| Q |
135 |
tggaaccatctctgattctttgattgaaatcaaatggaaaa |
175 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
28220356 |
tggaaccatctctgattctttgattgaaatcaaacggaaaa |
28220316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 301574 - 301408
Alignment:
| Q |
18 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
301574 |
agagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatcttcagcttgagggctagaatccctata |
301475 |
T |
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| Q |
118 |
gaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggct |
184 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
301474 |
gaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggct |
301408 |
T |
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