View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12240_low_2 (Length: 421)
Name: NF12240_low_2
Description: NF12240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12240_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 21435245 - 21434958
Alignment:
| Q |
20 |
atagagagagaaataaaatgagttttttaaccgagtgttgagagtatgagtacat-------tcattgttgaattaataatttataatttccctatacta |
112 |
Q |
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| T |
21435245 |
atagagagagaaataaaatgagttttttaaccgagtgttaagagtatgagtacatgcatgtatcatcgttgaattaataatttataatttccctatacta |
21435146 |
T |
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| Q |
113 |
atgaaaacttttaatggagaaagagtttcctaaatatcaatgcaagggcttacaatatatagatgaatagatgatcaaaagtggaaccatattcatgtta |
212 |
Q |
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| T |
21435145 |
aggaaaacttttaatggagaaagagtttcctaaatatcaatgcaagggcttacaatatataggtgaatagatgatcgaaaatggaaccatattcatgtta |
21435046 |
T |
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| Q |
213 |
actccaaaagcttggtctactagtaaaatgataagatttgaactcgaaagtcacctaacatcatcccatcatcct-aatttttattat |
299 |
Q |
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| T |
21435045 |
actctaaaagcttggtctattggtaaaatgataagctttgaactcgaaagtcacctaacaccaacccatcatcctaaatttttattat |
21434958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 21434913 - 21434847
Alignment:
| Q |
343 |
aaggaagaaaggaaaacaatgtaagttaattc-----ttccatatatgtttgaggaggagcacactc |
404 |
Q |
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| T |
21434913 |
aaggaagaaaggaaaacaatgttagttaattcttcctttccatatatttatgaggaggagcacactc |
21434847 |
T |
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