View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12240_low_4 (Length: 359)
Name: NF12240_low_4
Description: NF12240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12240_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 38422983 - 38423319
Alignment:
| Q |
5 |
tgttccacttgaatgatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38422983 |
tgttccacttgaatgatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacat |
38423082 |
T |
|
| Q |
105 |
tccgttttttcctttgattaattactcaaataatcaactttgctttgtgtttgcaactaagagatgggttggggtttatattaaggagaaaaggaaggtt |
204 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423083 |
tacgttttttcctttgattaattactcaaataatcaactttgctttgtgtttgcaactaagagatgggttggggtttatattaaggagaaaaggaaggtt |
38423182 |
T |
|
| Q |
205 |
ccacgttggcttttcttagtactcaaggnnnnnnnaatgggatagagaaaaagaaaattaggaatatagttgaaaaacaagtgttttatttatgaataat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423183 |
ccacgttggcttttcttagtactcaaggtttttttaatgggatagagaaaaagaaaattaggaatatagttgaaaaacaagtgttttatttatgaataat |
38423282 |
T |
|
| Q |
305 |
aaataatcctcataatatggtcatgtttggtggtttg |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423283 |
aaataatcctcataatatggtcatgtttggtggtttg |
38423319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 38413092 - 38413218
Alignment:
| Q |
1 |
agtctgttccacttgaat---gatgatgatttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaa |
97 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| | |
|
|
| T |
38413092 |
agtctgttccacctgaatcctgatgaagattgccacaaaaacttcaacctcaatgtttccttcttcagcctcttcaacaacgatcttttcttctcaacca |
38413191 |
T |
|
| Q |
98 |
ttgacattccgttttttcctttgatta |
124 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
38413192 |
ttgacattccgtttttctctttgatta |
38413218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University