View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12240_low_8 (Length: 246)

Name: NF12240_low_8
Description: NF12240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12240_low_8
NF12240_low_8
[»] scaffold0019 (3 HSPs)
scaffold0019 (26-138)||(23615-23727)
scaffold0019 (155-214)||(13075-13134)
scaffold0019 (155-196)||(22777-22818)
[»] chr8 (5 HSPs)
chr8 (26-103)||(17974051-17974128)
chr8 (26-103)||(20725670-20725747)
chr8 (26-103)||(20738568-20738645)
chr8 (26-112)||(20746857-20746943)
chr8 (26-83)||(20733611-20733668)
[»] chr5 (1 HSPs)
chr5 (26-103)||(22961437-22961514)
[»] chr1 (1 HSPs)
chr1 (26-111)||(45497278-45497363)
[»] scaffold0002 (1 HSPs)
scaffold0002 (26-103)||(121707-121784)
[»] chr6 (2 HSPs)
chr6 (26-103)||(13826181-13826258)
chr6 (29-108)||(14474073-14474152)
[»] scaffold1904 (1 HSPs)
scaffold1904 (29-86)||(36-93)
[»] scaffold1312 (1 HSPs)
scaffold1312 (29-86)||(2018-2075)
[»] chr7 (1 HSPs)
chr7 (26-103)||(12662362-12662439)
[»] chr3 (9 HSPs)
chr3 (29-86)||(4434096-4434153)
chr3 (29-86)||(4454891-4454948)
chr3 (26-103)||(30068232-30068309)
chr3 (26-86)||(18887794-18887854)
chr3 (26-86)||(18892021-18892081)
chr3 (26-86)||(18902204-18902264)
chr3 (29-103)||(40999552-40999626)
chr3 (29-103)||(41008335-41008409)
chr3 (29-103)||(27552461-27552535)


Alignment Details
Target: scaffold0019 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 23727 - 23615
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggacgagatttttacaga 125  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||| ||||||| ||||    
T  23727 aagccacttcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaaccgaggacgggatttttccaga 23628  T
Q  126 agcaaaaaacatc 138  Q
    |||||||||||||    
T  23627 agcaaaaaacatc 23615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 13134 - 13075
Alignment:
Q  155 ctgtgaatcggtctaaccctgtggcccatctgcgcgccccatgccctaaacccaataatc 214  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  13134 ctgtgaactggtctaaccctatggcccatctgcgcgccccatgccctaagcccaataatc 13075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 22818 - 22777
Alignment:
Q  155 ctgtgaatcggtctaaccctgtggcccatctgcgcgccccat 196  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  22818 ctgtgaaccggtctgaccctgtggcccatctgcgcgccccat 22777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 17974051 - 17974128
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  17974051 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 17974128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 20725670 - 20725747
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  20725670 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaagagaggaaatcagaa 20725747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 20738568 - 20738645
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  20738568 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaagagaggaaatcagaa 20738645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 20746857 - 20746943
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggacg 112  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||| |||| || |||||    
T  20746857 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcaacctttaaaagaaagagaggaaatcagaactggggacg 20746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 20733611 - 20733668
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaa 83  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20733611 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaa 20733668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 22961514 - 22961437
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22961514 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 22961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 45497278 - 45497363
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggac 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||    
T  45497278 aagccaattcatggtcctttaatctatttccttttaagaatttgcatcagcctttaaaagaaaaagaggaaatcagaactgaggac 45497363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 121707 - 121784
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  121707 aagccaattcatggtcctttaatctatttccttttaagaatttgtgtcagcctttaaaagaaaaagaggaaatcagaa 121784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 13826181 - 13826258
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13826181 aagccaattcatggtcctttaatttatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 13826258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 14474073 - 14474152
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgag 108  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||| |||| ||||    
T  14474073 ccaattcatggtcctttaatctatttccttttaagaatttgtttcagcctttaaaagaaagagaggaaatcagaagtgag 14474152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1904 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1904
Description:

Target: scaffold1904; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 36 - 93
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 86  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 93  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 2018 - 2075
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 86  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2018 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 2075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 12662362 - 12662439
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||   ||||||||| ||||    
T  12662362 aagccaattcatggtcctttaatctatttccttttaagaatttgtattagcctttaaaagaaggagaggaaatcagaa 12662439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 4434096 - 4434153
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 86  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4434096 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 4434153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 4454891 - 4454948
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 86  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4454891 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 4454948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 30068309 - 30068232
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| ||||    
T  30068309 aagccgattcatggtcctttaatctatttccttttaagaatttgtattagcctttaaaagaaagagaggaaatcagaa 30068232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 18887854 - 18887794
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 86  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  18887854 aagccaattcatggtcctttgatctatttccttttaagaatttgtatcagcctttaaaaga 18887794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 18892081 - 18892021
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 86  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  18892081 aagccaattcatggtcttttgatctatttccttttaagaatttgtatcagcctttaaaaga 18892021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 18902264 - 18902204
Alignment:
Q  26 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 86  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  18902264 aagccaattcatggtcttttgatctatttccttttaagaatttgtatcagcctttaaaaga 18902204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 40999552 - 40999626
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||   ||||||||| ||||    
T  40999552 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttaaaagaaggagaggaaatcagaa 40999626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 41008335 - 41008409
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||   ||||||||| ||||    
T  41008335 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttaaaagaaggagaggaaatcagaa 41008409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 27552535 - 27552461
Alignment:
Q  29 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 103  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || |||| |||||   ||||||||| ||||    
T  27552535 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttgaaagaaggagaggaaatcagaa 27552461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University