View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12240_low_9 (Length: 235)
Name: NF12240_low_9
Description: NF12240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12240_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 4108646 - 4108433
Alignment:
| Q |
12 |
cctgtgttggtagacaaattttgcaccaaatataaatatttgatggtattgtaggcaacatctatgatttgattaatgtcgattaaaaagatatcttttt |
111 |
Q |
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| T |
4108646 |
cctgtgttggtagacatgtttcgcaccaaatataaatatttgatggtattataggcaacatctatgatttgattaatgtcgattaaaaagatatctgttt |
4108547 |
T |
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| Q |
112 |
gctttaaatattttacaagctaaggatgaacgctgatttcttttggcttttattgtagaagaatgtccatgaagaggatggtagtttgggtgatgatgtt |
211 |
Q |
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| T |
4108546 |
gctttaagtattttacaagctaaggatcaacgctgatttcttttgacttttattgtagaagaatgtccatgaagaggatgttagtttgggtgatgatgtt |
4108447 |
T |
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| Q |
212 |
gctgatggtgatgt |
225 |
Q |
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| T |
4108446 |
gctgatggtgatgt |
4108433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 8994709 - 8994904
Alignment:
| Q |
12 |
cctgtgttggtagacaaattttgcaccaaatataaatatttgatggtattgtaggcaacatctatgatttgattaatgtcgattaaaaagat--atcttt |
109 |
Q |
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| T |
8994709 |
cctgtgttggtagaaaagtttcagaccaaatataaagatttgatggtattataggctgcatctataatttt-ttaatgttgatttaaaaaatccat-ttt |
8994806 |
T |
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| Q |
110 |
ttgctttaaatattttacaagcta-aggatgaacgctgatttcttttggcttttattgtagaagaatgtccatgaagaggatggtagtttgggtgatg |
206 |
Q |
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| T |
8994807 |
ttgatttacgtataattcaagtaataggattaacgctgatttctactgacttttattgtagaagaatgtccatgaagaggatgttagtttggttgatg |
8994904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 49712250 - 49712187
Alignment:
| Q |
158 |
cttttattgtagaagaatgtccatgaagaggatggtagtttgggtgatgatgttgctgatggtg |
221 |
Q |
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| T |
49712250 |
cttttattgtagaagaatgtccatgaagaggatgttagtttggttgatggtgtcgttgatggtg |
49712187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 49712397 - 49712333
Alignment:
| Q |
12 |
cctgtgttggtagacaaattttgcaccaaatataaatatttgatggtattgtaggcaacatctat |
76 |
Q |
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| T |
49712397 |
cctgtgttggtagaaaagtttcagaccaaatataaagatttgatggtattataggctgcatctat |
49712333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 21413542 - 21413456
Alignment:
| Q |
135 |
ggatgaacgctgatttcttttggcttttattgtagaagaatgtccatgaagaggatggtagtttgggtgatgatgttgctgatggtg |
221 |
Q |
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| T |
21413542 |
ggattaacgctgatttctactaacttttattgtagaagaatgtccatgaagaggatgttaatttggttgatggtgtcgttgatggtg |
21413456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 21413666 - 21413602
Alignment:
| Q |
12 |
cctgtgttggtagacaaattttgcaccaaatataaatatttgatggtattgtaggcaacatctat |
76 |
Q |
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| T |
21413666 |
cctgtgttggtagaaaagtttcagaccaaatataaagatttgatggtattataggctgcatctat |
21413602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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