View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_high_25 (Length: 202)
Name: NF12241_high_25
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 14764356 - 14764533
Alignment:
| Q |
7 |
cagaacctgtgcagtaagtgtaggaccatcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatg |
106 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14764356 |
cagaacctgcacagtaagtgtaggaccatcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatg |
14764455 |
T |
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| Q |
107 |
ccctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14764456 |
ccctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
14764533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 14749329 - 14749484
Alignment:
| Q |
29 |
ggaccatcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatgccctctaattttgcggtaaatt |
128 |
Q |
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|||||||||||||||||||||||||| |||| ||||| |||| ||||||||| ||| | |||||||||| ||| ||| ||||||||||||| ||||||| |
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| T |
14749329 |
ggaccatcacctaactcagggtggttggcataaaagcccttcgtcgtgtctagagaagctttcatgtctttaagcattccctctaattttgaagtaaatt |
14749428 |
T |
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| Q |
129 |
ggaatccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
184 |
Q |
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|| ||||||||||| |||| ||||||| ||||||||||||||| ||||| |||||| |
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| T |
14749429 |
ggtatccacattctttcttgagcttaattatgagactcctctcggcatcttcagaa |
14749484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 17564243 - 17564066
Alignment:
| Q |
7 |
cagaacctgtgcagtaagtgtaggaccatcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatg |
106 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564243 |
cagaacctgcacagtaagtgtaggaccatcacctaactcagggtgggtagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatg |
17564144 |
T |
|
| Q |
107 |
ccctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564143 |
ccctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
17564066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 17621370 - 17621546
Alignment:
| Q |
8 |
agaacctgtgcagtaagtgtaggaccatcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatgc |
107 |
Q |
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|||||||| ||||||||| ||||||| |||||||| |||||||| |||| |||| |||||| ||||||| ||| |||||||| ||||||||||||| |
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| T |
17621370 |
agaacctgcacagtaagtgaaggaccactacctaacttagggtggtcggcataaaagtccttcattgtgtctagagaagttttcatatctgtaaacatgc |
17621469 |
T |
|
| Q |
108 |
cctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
184 |
Q |
| |
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|||||||||||| |||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
17621470 |
cctctaattttgaggtaaaatggtatccacattctgtcttgagcttaatgatgagactcctctcagcgtcatcagaa |
17621546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 15194828 - 15194979
Alignment:
| Q |
33 |
catcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatgccctctaattttgcggtaaattggaa |
132 |
Q |
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|||||||||||||||||||| | |||| |||||||||||||| || || |||||||||||||||||| |||||||||||||||||||| ||||||| | | |
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| T |
15194828 |
catcacctaactcagggtggctggcataaaagctcttcatcgggtgtagagatgttttcatgtctgttaacatgccctctaattttgcagtaaattcgta |
15194927 |
T |
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| Q |
133 |
tccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
184 |
Q |
| |
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||||||||||||||| |||||| |||||||||||| ||| |||||||||||| |
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| T |
15194928 |
tccacattctgtcttgagcttagctatgagactccgctcggcatcatcagaa |
15194979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 15215246 - 15215397
Alignment:
| Q |
33 |
catcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatgccctctaattttgcggtaaattggaa |
132 |
Q |
| |
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|||||||||||||||||||| | |||| |||||||||||||| || || |||||||||||||||||| |||||||||||||||||||| ||||||| | | |
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| T |
15215246 |
catcacctaactcagggtggctggcataaaagctcttcatcgggtgtagagatgttttcatgtctgttaacatgccctctaattttgcagtaaattcgta |
15215345 |
T |
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| Q |
133 |
tccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
184 |
Q |
| |
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||||||||||||||| |||||| |||||||||||| ||| |||||||||||| |
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| T |
15215346 |
tccacattctgtcttgagcttagctatgagactccgctcggcatcatcagaa |
15215397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 24394777 - 24394953
Alignment:
| Q |
8 |
agaacctgtgcagtaagtgtaggaccatcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatgc |
107 |
Q |
| |
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|||||||| ||||||| ||||||||||| ||||| ||||||||| | |||| ||||| || ||| ||||| ||| |||||||||||||||||||| | |
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| T |
24394777 |
agaacctggacagtaagcgtaggaccatcgcctaagtcagggtggctggcataaaagccctgcattgtgtcctgagaggttttcatgtctgtaaacattc |
24394876 |
T |
|
| Q |
108 |
cctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatgagactcctctcagcatcatcagaa |
184 |
Q |
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|||||||||||| |||||||| | |||||||| ||||| |||||||| |||||||| || ||||||||||||||| |
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| T |
24394877 |
cctctaattttgatgtaaattgatagccacattcagtcttgagcttaacaatgagacttctttcagcatcatcagaa |
24394953 |
T |
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