View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_high_4 (Length: 503)
Name: NF12241_high_4
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 55330115 - 55329645
Alignment:
| Q |
19 |
taagtctaaaaatgtctgtccgtcacaaatatccattgcagatctacatgaaagcaggtaagtctgattagtataaattcgtaaagtgtgacattttgaa |
118 |
Q |
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| T |
55330115 |
taagtctaaaaatgtctgtccgtcacaaatatccattgcagatctacatgaaagcaggtaagtctgattagtataaattcgtaaagtgtgacattttgaa |
55330016 |
T |
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| Q |
119 |
taatgtgacattcgcaaaagaaacataaaataagatatggaggaatgcttacttggggttttgaaaacccatatttgttcctgaggcatgattgatcttc |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55330015 |
taatgtgacattcgcaaaagagacataaaataagatatggagggatgcttacttggggttttgaaaacccatatttgttcctgaggcatgattgagcttc |
55329916 |
T |
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| Q |
219 |
aaaactacaagcttgtccaaaagattcttagtttgttcaacatctggtttgaatgtgaaaatggtgagtactaactaactaactagtttgaagaaataga |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329915 |
aaaacaacaagcttgtccaaaagattcttagtttgttcaacatctggtttgaatgtgaaaatggtgagtactaactaactaactagtttgaagaaataga |
55329816 |
T |
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| Q |
319 |
gagaaagtagaaaagttgtggtgtagtactaccttggggcaagggtgatatagcatcgtaggggataacagtgacgccaagcttagcagtcaaattactc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55329815 |
gagaaagtagaaaagttgtggtgtagtactaccttggggcaagggtgatatagcatcgtaggggataacagtgacgccaagcttagcagccaaattactc |
55329716 |
T |
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| Q |
419 |
ttctccttggcagcttgtttttccctcagatgatgatcatcatcaagaagtttgatattagagttgttgtt |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329715 |
ttctccttggcagcttgtttttccctcagatgatgatcatcatcaagaagtttgatattagagttgttgtt |
55329645 |
T |
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