View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_high_6 (Length: 484)
Name: NF12241_high_6
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 79 - 340
Target Start/End: Complemental strand, 30518245 - 30517979
Alignment:
| Q |
79 |
gatttttagaggtttcaaatattattatatgaaaactttcaaaaagtcattcagactgtataatccgaatggaggtattttcagaattcagt-ggatgcg |
177 |
Q |
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|||||||||||||||||||| |||| |||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||| |
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| T |
30518245 |
gatttttagaggtttcaaattttataatatgaaaaccttcaaaaaatcattcagactatataatccgaacggaggtattttcagaattcagtaggacgcg |
30518146 |
T |
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| Q |
178 |
tgagaataaagtagtgtggaaaaagaaattgccaaaataaaattacatctgaaaaaggttgaagactaattatttttatttaatannnnnnnaaaatacc |
277 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
30518145 |
tgataataaagtagtgtggaaaaagaaattgctaaaataaaattacatctgaaaaaggttgaaaactaattatttttacttaatattttttt-aaatacc |
30518047 |
T |
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| Q |
278 |
aaatgttagtatgtaaattgttatgttagt-----tttatttaacaatgttattcttaaaatgtcttt |
340 |
Q |
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| T |
30518046 |
aattgttggtatataaattgttatgttagttttactttatttaacaatgttattcttaaaatgtcttt |
30517979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 79 - 340
Target Start/End: Complemental strand, 30558585 - 30558319
Alignment:
| Q |
79 |
gatttttagaggtttcaaatattattatatgaaaactttcaaaaagtcattcagactgtataatccgaatggaggtattttcagaattcagt-ggatgcg |
177 |
Q |
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|||||||||||||||||||| |||| |||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||| |
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| T |
30558585 |
gatttttagaggtttcaaattttataatatgaaaaccttcaaaaaatcattcagactatataatccgaacggaggtattttcagaattcagtaggacgcg |
30558486 |
T |
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| Q |
178 |
tgagaataaagtagtgtggaaaaagaaattgccaaaataaaattacatctgaaaaaggttgaagactaattatttttatttaatannnnnnnaaaatacc |
277 |
Q |
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| T |
30558485 |
tgataataaagtagtgtggaaaaagaaattgctaaaataaaattacatctgaaaaaggttgaaaactaattatttttacttaatattttttt-aaatacc |
30558387 |
T |
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| Q |
278 |
aaatgttagtatgtaaattgttatgttagt-----tttatttaacaatgttattcttaaaatgtcttt |
340 |
Q |
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| T |
30558386 |
aattgttggtatataaattgttatgttagttttactttatttaacaatgttattcttaaaatgtcttt |
30558319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 479
Target Start/End: Complemental strand, 30517880 - 30517839
Alignment:
| Q |
438 |
ggttctccaaaagttttacattgctacttttggtctctgctt |
479 |
Q |
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| T |
30517880 |
ggttctccaaaagttttacattgctacttttggtctctgctt |
30517839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 479
Target Start/End: Complemental strand, 30558220 - 30558179
Alignment:
| Q |
438 |
ggttctccaaaagttttacattgctacttttggtctctgctt |
479 |
Q |
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| T |
30558220 |
ggttctccaaaagttttacattgctacttttggtctctgctt |
30558179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 37993652 - 37993619
Alignment:
| Q |
277 |
caaatgttagtatgtaaattgttatgttagtttt |
310 |
Q |
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| T |
37993652 |
caaatgttagtatgttaattgttatgttagtttt |
37993619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 15873837 - 15873799
Alignment:
| Q |
272 |
aataccaaatgttagtatgtaaattgttatgttagtttt |
310 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |
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| T |
15873837 |
aataacaaatgttagtatgttaattgttatgttagtttt |
15873799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 9922236 - 9922203
Alignment:
| Q |
277 |
caaatgttagtatgtaaattgttatgttagtttt |
310 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
9922236 |
caaatgttagtatgttaattgttatgttagtttt |
9922203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 54258482 - 54258449
Alignment:
| Q |
277 |
caaatgttagtatgtaaattgttatgttagtttt |
310 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
54258482 |
caaatgttagtatgttaattgttatgttagtttt |
54258449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 53506259 - 53506227
Alignment:
| Q |
278 |
aaatgttagtatgtaaattgttatgttagtttt |
310 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
53506259 |
aaatgttagtatgttaattgttatgttagtttt |
53506227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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