View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_high_9 (Length: 352)
Name: NF12241_high_9
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 24 - 338
Target Start/End: Original strand, 28291019 - 28291333
Alignment:
| Q |
24 |
atgttagtgcataggtaataatcaaggagtaactataaagctattgagcatgtataactacaatcatgactacagttgaccaatattctaattgccttta |
123 |
Q |
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| T |
28291019 |
atgttagtgcataggtaataatcaaggagtaactataaagctattgagcatgtataactacaatcatgactacagttgaccgatattctaattgccttta |
28291118 |
T |
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| Q |
124 |
gcctttaaggaggattcctcatcgttcaaacttttatcaggccaatatctaatgtgttaaatatctaaggaattacaacactcccatgttacaaacaaac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28291119 |
gcctttaaggaggattcctcatcgttcaaacttttatcaggccaatatctaatgtgttaaatatctaaggaattacaacactcacatgttacaaacaaac |
28291218 |
T |
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| Q |
224 |
acttcaagaaaacaaaatataaatgcgtgtttaataaacggttgttgaaaaagcaactgacacataagataaacagactaaatgaaacctgctagaaaga |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28291219 |
acttcaagaaaacaaaatataaatgcgtgtttaataaacggttgttgaaaaagccactgacacataagataaacagactaaatgaaacctgctagaaaga |
28291318 |
T |
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| Q |
324 |
taacataacacaggt |
338 |
Q |
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||||||||||||||| |
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| T |
28291319 |
taacataacacaggt |
28291333 |
T |
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