View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12241_low_1 (Length: 1211)

Name: NF12241_low_1
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12241_low_1
NF12241_low_1
[»] chr1 (6 HSPs)
chr1 (1-976)||(47435702-47436681)
chr1 (38-84)||(39940567-39940613)
chr1 (38-84)||(2492557-2492603)
chr1 (33-83)||(27545396-27545446)
chr1 (51-84)||(33939391-33939424)
chr1 (39-84)||(43929431-43929476)
[»] chr8 (10 HSPs)
chr8 (37-78)||(9793444-9793485)
chr8 (39-93)||(18959245-18959299)
chr8 (26-84)||(38414295-38414353)
chr8 (49-84)||(7258677-7258712)
chr8 (33-84)||(8793736-8793787)
chr8 (39-84)||(2296556-2296601)
chr8 (39-84)||(12958793-12958838)
chr8 (39-84)||(35011229-35011274)
chr8 (39-84)||(42786381-42786426)
chr8 (39-84)||(44796359-44796404)
[»] chr2 (8 HSPs)
chr2 (33-84)||(28249013-28249064)
chr2 (33-84)||(5109380-5109431)
chr2 (33-84)||(12873740-12873791)
chr2 (39-84)||(5528173-5528218)
chr2 (51-84)||(26234118-26234151)
chr2 (31-84)||(31102023-31102076)
chr2 (31-84)||(41153189-41153242)
chr2 (39-84)||(45034415-45034460)
[»] chr7 (9 HSPs)
chr7 (24-86)||(48873008-48873070)
chr7 (49-85)||(30138880-30138916)
chr7 (41-84)||(28949285-28949328)
chr7 (33-84)||(41850613-41850664)
chr7 (39-84)||(4826779-4826824)
chr7 (31-84)||(9555334-9555387)
chr7 (38-83)||(22752574-22752619)
chr7 (39-84)||(27231919-27231964)
chr7 (31-84)||(37101708-37101761)
[»] chr3 (10 HSPs)
chr3 (38-84)||(21970514-21970560)
chr3 (38-84)||(21992950-21992996)
chr3 (51-84)||(336079-336112)
chr3 (33-94)||(1755866-1755927)
chr3 (47-84)||(24596904-24596941)
chr3 (33-84)||(39836941-39836992)
chr3 (27-76)||(21730147-21730196)
chr3 (51-84)||(38677578-38677611)
chr3 (51-84)||(41743684-41743717)
chr3 (39-76)||(54087483-54087520)
[»] scaffold0294 (1 HSPs)
scaffold0294 (47-84)||(13002-13039)
[»] chr5 (9 HSPs)
chr5 (33-85)||(1100069-1100121)
chr5 (33-84)||(1098641-1098692)
chr5 (33-84)||(13391544-13391595)
chr5 (38-84)||(15968328-15968374)
chr5 (35-84)||(892564-892613)
chr5 (32-85)||(7613433-7613486)
chr5 (51-84)||(26141768-26141801)
chr5 (31-84)||(36897755-36897808)
chr5 (47-84)||(40515240-40515277)
[»] chr4 (9 HSPs)
chr4 (33-92)||(26254559-26254617)
chr4 (33-84)||(53225724-53225775)
chr4 (38-84)||(44755510-44755556)
chr4 (39-84)||(20459326-20459371)
chr4 (31-84)||(39993116-39993169)
chr4 (39-84)||(42804273-42804318)
chr4 (39-84)||(43020773-43020818)
chr4 (39-84)||(47866053-47866098)
chr4 (51-84)||(49481893-49481926)
[»] chr6 (2 HSPs)
chr6 (47-84)||(1302760-1302797)
chr6 (51-84)||(31398320-31398353)


Alignment Details
Target: chr1 (Bit Score: 865; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 865; E-Value: 0
Query Start/End: Original strand, 1 - 976
Target Start/End: Complemental strand, 47436681 - 47435702
Alignment:
Q  1 ttcaatgactaatgtattagatcgtaatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataactgagactgatggact 100  Q
    |||||||||||||||||||| |||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  47436681 ttcaatgactaatgtattaggtcgtaatacagaccaaatacattggttattgaatgaatctacaatgtaaacttttacttataactgagaccgatggact 47436582  T
Q  101 acgtctttaaattttattgttagaacattaatgtattttcattttggttacaaaga--gattgaagtacgcacactttggattgatgtaaataaaaaata 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  47436581 acgtctttaaattttattgttagaacattaatgtattttcattttggttacaaaaacagattgaagtacgcacactttggattgatgtaaataaaaaata 47436482  T
Q  199 tattgtatcattataatttgatgattctttgagcacatgtatgcatgcagacacaacaggaacttcaccaaaatgatctt--gggggatgagaatgataa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  47436481 tattgtatcattataatttgatgattctttgagcacatgtatgcatgcagacacaacaggaacttcaccaaaatgatcttttgagggatgagaatgataa 47436382  T
Q  297 gcttcgtgctgaaaatgagatctataagggggcactaaaagacactttatgtacaaattgtactggtccaatttctattggtgaaatgtcatctaacgac 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436381 gcttcgtgctgaaaatgagatctataagggggcactaaaagacactttatgtacaaattgtactggtccaatttctattggtgaaatgtcatctaacgac 47436282  T
Q  397 aatcaacttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaatttannnnnnnaa 496  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  47436281 aatcagcttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaatttatttttttaa 47436182  T
Q  497 taatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttattct--tggttgaactaatggttatgcatgttttgttaattg 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||  ||||||||||     
T  47436181 taatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttcttctattggttgaactaatggttatgcat--tttgttaattc 47436084  T
Q  595 ttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttcctcctctaaatttggtcaaatgcctacacctgcattt 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47436083 ttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttcctcctctaaaattggtcaaatgcctacacctgcattt 47435984  T
Q  695 gaaataggaagtaatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttg 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47435983 gaaataggaagtaatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttg 47435884  T
Q  795 acaaagcaacgattgtagaacttgctgtggtttctatggaggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacactga 894  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47435883 acaaagcaacgattgtagaacttgctgtggtttctatggaggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacactga 47435784  T
Q  895 gattctaaatgaagctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca 976  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47435783 gattctaaatgaagctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca 47435702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 39940567 - 39940613
Alignment:
Q  38 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  39940567 atacattatttattgaatgaatctaaaaagtaaatttttacttataa 39940613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 2492557 - 2492603
Alignment:
Q  38 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||    
T  2492557 atacatcatttattgaatggatctaaaatgtaaacttttgcttataa 2492603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 27545396 - 27545446
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttata 83  Q
    ||||||||||||| ||||||||||||||||||| || ||||| | ||||||    
T  27545396 accaaatacattagttattgaatgaatctaaaaagtgaacttatgcttata 27545446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 33939391 - 33939424
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||||||||||||||||| |||||||    
T  33939391 tgaatgaatctaaaatgtaaacttttgcttataa 33939424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 43929431 - 43929476
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  43929431 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 43929476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 9793444 - 9793485
Alignment:
Q  37 aatacattaattattgaatgaatctaaaatgtaaacttttac 78  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  9793444 aatacattagttattgaatgaatctaaaatgtaaacttttac 9793485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 18959299 - 18959245
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataactgagactg 93  Q
    ||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||    
T  18959299 tacatcaattattgaatgaacctaaaatgttaaattttacttataactgtgactg 18959245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 38414295 - 38414353
Alignment:
Q  26 aatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| | |||||||||| |||||||||||||||||||| || |||||||| ||||||    
T  38414295 aatacatatcaaatacattcattattgaatgaatctaaaaagtgaacttttatttataa 38414353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 7258677 - 7258712
Alignment:
Q  49 attgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7258677 attgaatgaatctaaaatgtaaaattttacttataa 7258712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 8793787 - 8793736
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||| ||||| | |||||||||||||| | |||||||||||||||    
T  8793787 accaaatacatcaattactcaatgaatctaaaatatcaacttttacttataa 8793736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 2296556 - 2296601
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||| | ||||||||||||||||||| ||| ||||||||||||    
T  2296556 tacattattaattgaatgaatctaaaatgcaaaattttacttataa 2296601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 12958838 - 12958793
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  12958838 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 12958793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 35011274 - 35011229
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||||||||||||||||||  | ||||||| |||||||    
T  35011274 tacattaattattgaatgaatctaaaaaattaactttttcttataa 35011229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 42786426 - 42786381
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  42786426 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 42786381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 44796404 - 44796359
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  44796404 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 44796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 28249013 - 28249064
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||| ||||||||||||| || ||||||| |||||||    
T  28249013 accaaatacattaattatttaatgaatctaaaaagtcaactttttcttataa 28249064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 5109431 - 5109380
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||| | ||||||||||||| || ||||||| |||||||    
T  5109431 accaaatacattaattactcaatgaatctaaaaagttaactttttcttataa 5109380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 12873791 - 12873740
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||| | ||||||||||||| || ||||||| |||||||    
T  12873791 accaaatacattaattacttaatgaatctaaaaagtcaactttttcttataa 12873740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 5528218 - 5528173
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||| ||||||||||||| |||||  |||||||||||||||||    
T  5528218 tacattagttattgaatgaatataaaaaataaacttttacttataa 5528173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 26234118 - 26234151
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||||||||||||||||| |||||||    
T  26234118 tgaatgaatctaaaatgtaaacttttgcttataa 26234151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 31102023 - 31102076
Alignment:
Q  31 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| |||||| | ||| ||||||||||||||||| |||||||| |||||||    
T  31102023 aaaccacatacatcatttaatgaatgaatctaaaatgcaaacttttgcttataa 31102076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 41153189 - 41153242
Alignment:
Q  31 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||| ||||| | ||||||||||||| || ||||||| |||||||    
T  41153189 aaaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataa 41153242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 45034460 - 45034415
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  45034460 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 45034415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 48873008 - 48873070
Alignment:
Q  24 gtaatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataact 86  Q
    |||||||  ||||||||||||||||||||||||||| |||||  | ||||||| |||||||||    
T  48873008 gtaataccgaccaaatacattaattattgaatgaatttaaaaattgaacttttgcttataact 48873070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 30138880 - 30138916
Alignment:
Q  49 attgaatgaatctaaaatgtaaacttttacttataac 85  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30138880 attgaatgaatctaaaatgtaaatttttacttataac 30138916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 28949328 - 28949285
Alignment:
Q  41 cattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| || |||||||||||||| |||||||||||||||||||    
T  28949328 cattaaataatgaatgaatctaaactgtaaacttttacttataa 28949285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 41850664 - 41850613
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||| |||||||||||||  | ||||||| |||||||    
T  41850664 accaaatacattaattattcaatgaatctaaaaaattaactttttcttataa 41850613  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 4826824 - 4826779
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  4826824 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 4826779  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 9555334 - 9555387
Alignment:
Q  31 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| |||||| | ||| ||||||||||||||||||||| |||| |||||||    
T  9555334 aaaccacatacatcatttaatgaatgaatctaaaatgtaaagttttgcttataa 9555387  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 22752619 - 22752574
Alignment:
Q  38 atacattaattattgaatgaatctaaaatgtaaacttttacttata 83  Q
    |||||||| |||||||||||||||||||| |||| |||| ||||||    
T  22752619 atacattatttattgaatgaatctaaaatataaatttttgcttata 22752574  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 27231919 - 27231964
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  27231919 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 27231964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 37101761 - 37101708
Alignment:
Q  31 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| |||||| | ||| ||||||||||||||||| ||| ||||||||||||    
T  37101761 aaaccacatacatcatttaatgaatgaatctaaaatgcaaagttttacttataa 37101708  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 21970560 - 21970514
Alignment:
Q  38 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  21970560 atacatcatttattgaatgaatataaaatgtaaacttttacttataa 21970514  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 21992996 - 21992950
Alignment:
Q  38 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  21992996 atacatcatttattgaatgaatataaaatgtaaacttttacttataa 21992950  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 336112 - 336079
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||||||||||||||||||    
T  336112 tgaatgaatctaaaatgtaaacttttacttataa 336079  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 1755927 - 1755866
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataactgagactga 94  Q
    |||||||||||||||||||||||||||||| ||  | || |||| || ||||||||||||||    
T  1755927 accaaatacattaattattgaatgaatctagaaaatgaatttttgctgataactgagactga 1755866  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 24596941 - 24596904
Alignment:
Q  47 ttattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24596941 ttattgaatgaatctaaaatgtaaatttttacttataa 24596904  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 39836941 - 39836992
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||| |||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  39836941 accacatacatcatttattgaatgaatctaaaaagtaaacttttatttataa 39836992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 21730147 - 21730196
Alignment:
Q  27 atacaaaccaaatacattaattattgaatgaatctaaaatgtaaactttt 76  Q
    ||||| ||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  21730147 atacagaccaaatacattaattaatgaataaatctaaaaagtaaagtttt 21730196  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 38677611 - 38677578
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||||||||||||||||| |||||||    
T  38677611 tgaatgaatctaaaatgtaaacttttgcttataa 38677578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 41743684 - 41743717
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||| |||||||||||||||||||||||    
T  41743684 tgaatgaatccaaaatgtaaacttttacttataa 41743717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 54087483 - 54087520
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaactttt 76  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  54087483 tacattaattattgaatgaatttaaaatgttaactttt 54087520  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 13002 - 13039
Alignment:
Q  47 ttattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13002 ttattgaatgaatctaaaaagtaaacttttacttataa 13039  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 1100121 - 1100069
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataac 85  Q
    |||| |||||| | ||| |||||||||||||||||||||||||| ||||||||    
T  1100121 accacatacatcatttaatgaatgaatctaaaatgtaaacttttgcttataac 1100069  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 1098692 - 1098641
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||| |||||| | ||||||||||||||||||| || |||||||||||||||    
T  1098692 accacatacatcatttattgaatgaatctaaaaagtcaacttttacttataa 1098641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 13391595 - 13391544
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||| | ||||||||||||||||||| ||  ||||||||||||||    
T  13391595 accaaatacatcatttattgaatgaatctaaaaagttgacttttacttataa 13391544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 15968374 - 15968328
Alignment:
Q  38 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||||||||||||  | ||||||| |||||||    
T  15968374 atacattaattattgaatgaatctaaaaaattaactttttcttataa 15968328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 892613 - 892564
Alignment:
Q  35 caaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||| ||||||||||||| || || |||| |||||||    
T  892613 caaatacattaattattcaatgaatctaaaaagtgaatttttgcttataa 892564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 7613433 - 7613486
Alignment:
Q  32 aaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataac 85  Q
    |||||||||||| | ||||| ||||||||||||| ||  |||||||||||||||    
T  7613433 aaccaaatacatcatttattaaatgaatctaaaaagttgacttttacttataac 7613486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 26141801 - 26141768
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||||||||||||||||| |||||||    
T  26141801 tgaatgaatctaaaatgtaaacttttgcttataa 26141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 36897808 - 36897755
Alignment:
Q  31 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||| |||||| | ||||| ||||||| ||||||||||| ||||||||||||    
T  36897808 aaaccacatacatcatttatttaatgaatttaaaatgtaaatttttacttataa 36897755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 40515277 - 40515240
Alignment:
Q  47 ttattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||| || |||||||||||||||    
T  40515277 ttattgaatgaatctaaaaagtcaacttttacttataa 40515240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 26254617 - 26254559
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataactgagact 92  Q
    ||||||||||||||||||| ||||||| ||||| |||||| | ||||||||| |||||||    
T  26254617 accaaatacattaattattaaatgaatataaaaagtaaac-tctacttataattgagact 26254559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 53225724 - 53225775
Alignment:
Q  33 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||||||||||||||||| ||||||||||||| || || |||| |||||||    
T  53225724 accaaatacattaattattcaatgaatctaaaaagtcaattttttcttataa 53225775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 44755510 - 44755556
Alignment:
Q  38 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||| ||| ||||||||||||||||| ||| ||||||||||||    
T  44755510 atacattatttaatgaatgaatctaaaatgcaaagttttacttataa 44755556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 20459326 - 20459371
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  20459326 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 20459371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 39993116 - 39993169
Alignment:
Q  31 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||| |||||||||||||||| ||||||||||||| || |  ||||||||||||    
T  39993116 aaactaaatacattaattattcaatgaatctaaaaagttattttttacttataa 39993169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 42804318 - 42804273
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  42804318 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 42804273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 43020818 - 43020773
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  43020818 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 43020773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 47866098 - 47866053
Alignment:
Q  39 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  47866098 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 47866053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 49481926 - 49481893
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||||||||||||||||| |||||||    
T  49481926 tgaatgaatctaaaatgtaaacttttgcttataa 49481893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 1302797 - 1302760
Alignment:
Q  47 ttattgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  1302797 ttattgaatgaaactaaaatgtaaatttttacttataa 1302760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 31398320 - 31398353
Alignment:
Q  51 tgaatgaatctaaaatgtaaacttttacttataa 84  Q
    |||||||||||||||||||||||||| |||||||    
T  31398320 tgaatgaatctaaaatgtaaacttttgcttataa 31398353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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