View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12241_low_12 (Length: 345)

Name: NF12241_low_12
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12241_low_12
NF12241_low_12
[»] chr4 (17 HSPs)
chr4 (22-336)||(5551831-5552145)
chr4 (22-317)||(5854265-5854563)
chr4 (29-327)||(5849282-5849583)
chr4 (29-319)||(5887507-5887797)
chr4 (56-329)||(5896382-5896658)
chr4 (35-320)||(3747594-3747879)
chr4 (31-327)||(5557605-5557901)
chr4 (207-320)||(5563397-5563510)
chr4 (208-317)||(5856751-5856860)
chr4 (233-327)||(5612206-5612300)
chr4 (240-327)||(5604088-5604175)
chr4 (29-166)||(5612364-5612501)
chr4 (32-110)||(5856955-5857033)
chr4 (278-332)||(5890816-5890870)
chr4 (241-327)||(5572654-5572740)
chr4 (241-327)||(5584861-5584947)
chr4 (62-110)||(5604302-5604350)
[»] chr8 (1 HSPs)
chr8 (280-327)||(1481830-1481877)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 5552145 - 5551831
Alignment:
Q  22 catggaaccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaag 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  5552145 catggaaccatagaatgttcacattcacaagcagataagcattggaaaatgattcagattgtggacatttcttgcaacaatttcaatggtaagttacaag 5552046  T
Q  122 aaaaatacttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattagga 221  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  5552045 aaaaatacttcgcaacttgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacgcgaaacaaagactgctcatactatcagga 5551946  T
Q  222 tagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccg 321  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5551945 tagtgtgacagtttctattaaaggtcagcaaatgaagtttgttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggacca 5551846  T
Q  322 ataccacaggttctg 336  Q
    |||||||||||||||    
T  5551845 ataccacaggttctg 5551831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 5854265 - 5854563
Alignment:
Q  22 catggaaccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaag 121  Q
    |||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||  ||||||    
T  5854265 catggatccatggaatgttcacattcacaagcagataagcattagaaaatgattcagattgtggacattgctttcaacaatttcaatggaaaactacaag 5854364  T
Q  122 aaaaatacttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattagga 221  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||||||||| | ||| ||||| | | |||| ||| ||||    
T  5854365 aaaaatacttcgcaacatgggatagaat--tgcaagatgaagatgatgttatatcagacttcatccacacgctaaagaaagactacacatattatcagga 5854462  T
Q  222 tagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagc-----aatcttcacagccattgatttctcatccaatcattttgaag 316  Q
    || |||||| ||||| | |||||||||| | ||||||||||||||||||||| |     |||||||||||| ||||||||||||||||||||||| ||||    
T  5854463 tactgtgacagtttccaataaaggtcaggagatgaagttggttaaaattctaacaatataatcttcacagcgattgatttctcatccaatcatttcgaag 5854562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 327
Target Start/End: Original strand, 5849282 - 5849583
Alignment:
Q  29 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 128  Q
    ||||||||||||||||||||| |  | |||||| ||||||||||||||| |||||||||||| |||| | |||||||||||| ||  ||| |||||||||    
T  5849282 ccatagaatgttcacattcactagaaaataagccttggaaaatgattcaaattgtggacattgctttgaacaatttcaatggaaaaataccagaaaaata 5849381  T
Q  129 cttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccaca-ca--cgaaacaaagattgctcatactattaggatagt 225  Q
     |||   |||||||| ||||||||||| ||||||  ||||  |||| ||||||||||| ||| ||   |||| ||   || |||||| ||  | ||||||    
T  5849382 tttcatgacatgggaaagaatgatgcatgatgaaaatgattctatatcagacttcatctacagcatgggaaagaacttttactcatattaccaagatagt 5849481  T
Q  226 gtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatac 325  Q
    ||||| ||||| | |||||||||  |||| |||| ||  |||||||||  |||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  5849482 gtgaccgtttccaataaaggtcaaaaaattaagtaggaaaaaattctaaaaatctttacagccattgatttctcatccaatcatttcgaaggaccaatac 5849581  T
Q  326 ca 327  Q
    ||    
T  5849582 ca 5849583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 319
Target Start/End: Original strand, 5887507 - 5887797
Alignment:
Q  29 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 128  Q
    |||||||||||||| |||| | |  | |||||| ||||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||| |||||||||    
T  5887507 ccatagaatgttcagattctctagaaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaaataccagaaaaata 5887606  T
Q  129 cttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtg 228  Q
     ||| |||||||||| ||||||||||||||||||   ||| | | | ||||||||||||| |   ||   ||    | |||||| ||  | |||||||||    
T  5887607 tttcacaacatgggaaagaatgatgcaagatgaaaacgatttgaaatcagacttcatccatatgagatttaacttcttctcatattaccaagatagtgtg 5887706  T
Q  229 acggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggac 319  Q
    || ||||| | |||||||||  || | ||||  | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  5887707 acagtttccaataaaggtcaagaacttaagtatgataaaattctaacaatctttacagccattgatttctcatccaatcattttgaaggac 5887797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 56 - 329
Target Start/End: Original strand, 5896382 - 5896658
Alignment:
Q  56 ataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatacttcgcaacatgggatagaatgatgca 155  Q
    |||||| ||||||||||||||| |||||||||||| |||||| ||||||||| || ||  |||||||||||||||| ||||||||||| | ||||| | |    
T  5896382 ataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaacggaaaactacaagaaaaatactttgcaacatgggaaaaaatgaagaa 5896481  T
Q  156 agatgaagttgatgttataccagacttcatccacacacg---aaacaaagattgctcatactattaggatagtgtgacggtttctattaaaggtcagcaa 252  Q
     ||||||    ||||| || ||||||| ||||||||  |   ||  | ||| | | |||| ||| |||||||||||||  |||||| |||||||||        
T  5896482 tgatgaaaacaatgttctatcagactttatccacacgggggaaaggacagactacacatattatcaggatagtgtgacaatttctactaaaggtcaagtg 5896581  T
Q  253 atgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgataccaca 329  Q
    ||| ||||| |||||||| || ||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  5896582 atgcagttgcttaaaattttaacaatctttacagccattgatttctcatcaaatcatttcgaaggaccaataccaca 5896658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 320
Target Start/End: Complemental strand, 3747879 - 3747594
Alignment:
Q  35 aatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatacttcgc 134  Q
    ||||||||| ||||| | || |||||| ||||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||   |||||||| ||| |    
T  3747879 aatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaaatatttcac 3747780  T
Q  135 aacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtgacggtt 234  Q
    | ||||||| ||||||||||| ||||||  ||||| | || | || || ||||  |||    |   |     | |||| ||| | |||||||||||||||    
T  3747779 agcatgggaaagaatgatgcatgatgaacatgatgatgtatcggaatttatcccgacagtggaggcattcaacccatattatcatgatagtgtgacggtt 3747680  T
Q  235 tctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggacc 320  Q
    || | |||||||||  | ||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  3747679 tccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggacc 3747594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 327
Target Start/End: Complemental strand, 5557901 - 5557605
Alignment:
Q  31 atagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatact 130  Q
    |||||||||||||||||||    | |||||| ||||||||||||||| ||||| || ||| |||||| |||||||||||| ||| |||  |||||||| |    
T  5557901 atagaatgttcacattcactcgaaaataagccttggaaaatgattcaaattgttgatattgctttcaacaatttcaatgggaagctacctgaaaaatatt 5557802  T
Q  131 tcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtgac 230  Q
    || || ||||||| ||||||| ||  || |||  ||||  | || |||||||  |||||||| |  |   |   |  ||||| ||  ||||||||| |||    
T  5557801 tcacatcatgggaaagaatgaagcgtgaagaaaatgataatgtatcagactttgtccacacaggggattcattattatcatattaccaggatagtgcgac 5557702  T
Q  231 ggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 327  Q
     ||||| | ||||||||  |||||| ||||||||||||||||| |||| || ||| ||||||| |||||||||||||||||||||||||| ||||||    
T  5557701 agtttccaataaaggtcgacaaatggagttggttaaaattctaacaatatttacaaccattgacttctcatccaatcattttgaaggaccaatacca 5557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 5563510 - 5563397
Alignment:
Q  207 ctcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaat 306  Q
    |||||| ||| |||||||| |||| ||||| ||||||||||| || ||  |||||||||||||| ||  ||||||||||||||||||||| |||||||||    
T  5563510 ctcatattatcaggatagtatgacagtttccattaaaggtcaacagatagagttggttaaaattttaaaaatcttcacagccattgatttatcatccaat 5563411  T
Q  307 cattttgaaggacc 320  Q
    ||||||||||||||    
T  5563410 cattttgaaggacc 5563397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 5856860 - 5856751
Alignment:
Q  208 tcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatc 307  Q
    ||||| ||| |||||||||||||  |||| | ||||||||| |||||| ||||| |||| |||||| |||||||||||||||||||||| ||||||||||    
T  5856860 tcatattatcaggatagtgtgacaatttccaataaaggtcaacaaatggagttgattaagattctaacaatcttcacagccattgatttatcatccaatc 5856761  T
Q  308 attttgaagg 317  Q
    ||||||||||    
T  5856760 attttgaagg 5856751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 327
Target Start/End: Complemental strand, 5612300 - 5612206
Alignment:
Q  233 tttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 327  Q
    |||||| |||||||||  | |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||| ||||||||||| ||||||    
T  5612300 tttctactaaaggtcaagagatgaagttggttaaaattctaaaaatcttcatggccattgatttctcatccaatcactttgaaggaccaatacca 5612206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 5604175 - 5604088
Alignment:
Q  240 taaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 327  Q
    ||||||||| |||||| ||||||||||||||||| |||| | ||||| ||||||||||||||||||   |||||||||||| ||||||    
T  5604175 taaaggtcaacaaatggagttggttaaaattctaacaatttacacagtcattgatttctcatccaactcttttgaaggaccaatacca 5604088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 5612501 - 5612364
Alignment:
Q  29 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 128  Q
    ||||||||||| |||| |||| |  | |||||| ||||||||||||||| |||||||||||| | ||||   ||||||| || ||  ||| ||||| ||     
T  5612501 ccatagaatgtacacactcactagaaaataagccttggaaaatgattcaaattgtggacattgcattcaatgatttcaacggaaaactaccagaaacatt 5612402  T
Q  129 cttcgcaacatgggatagaatgatgcaagatgaagttg 166  Q
    |||| |||||||||| | ||||||||| ||||||||||    
T  5612401 cttcacaacatgggaaaaaatgatgcacgatgaagttg 5612364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 5857033 - 5856955
Alignment:
Q  32 tagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatgg 110  Q
    |||||||||||||||||| |  | ||||||  |||||||||||||| ||||| |||||| |||||| ||||||||||||    
T  5857033 tagaatgttcacattcactagaaaataagccgtggaaaatgattcaaattgtcgacattgctttcaacaatttcaatgg 5856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 5890816 - 5890870
Alignment:
Q  278 tcttcacagccattgatttctcatccaatcattttgaaggaccgataccacaggt 332  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  5890816 tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggt 5890870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 327
Target Start/End: Original strand, 5572654 - 5572740
Alignment:
Q  241 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 327  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5572654 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 327
Target Start/End: Original strand, 5584861 - 5584947
Alignment:
Q  241 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 327  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5584861 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5584947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 5604350 - 5604302
Alignment:
Q  62 attggaaaatgattcagattgtggacatttctttcagcaatttcaatgg 110  Q
    |||||||||||||||| |||||||||||| ||| || ||||||||||||    
T  5604350 attggaaaatgattcaaattgtggacattgcttccaacaatttcaatgg 5604302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 1481877 - 1481830
Alignment:
Q  280 ttcacagccattgatttctcatccaatcattttgaaggaccgatacca 327  Q
    |||||| |||||||||||||||||||||| |||||||||  |||||||    
T  1481877 ttcacaaccattgatttctcatccaatcactttgaaggattgatacca 1481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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