View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12241_low_13 (Length: 337)

Name: NF12241_low_13
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12241_low_13
NF12241_low_13
[»] chr6 (2 HSPs)
chr6 (6-319)||(22706594-22706908)
chr6 (23-71)||(21618466-21618515)
[»] chr1 (2 HSPs)
chr1 (6-99)||(18896377-18896470)
chr1 (54-99)||(18615150-18615195)
[»] chr2 (6 HSPs)
chr2 (26-98)||(19115338-19115410)
chr2 (23-70)||(23184165-23184212)
chr2 (23-70)||(23595422-23595469)
chr2 (6-51)||(26618955-26619000)
chr2 (54-98)||(26618922-26618966)
chr2 (23-70)||(33074442-33074490)
[»] chr4 (3 HSPs)
chr4 (24-99)||(17540629-17540704)
chr4 (15-76)||(17787894-17787956)
chr4 (203-277)||(15155591-15155665)
[»] scaffold0273 (1 HSPs)
scaffold0273 (15-69)||(5859-5913)
[»] chr8 (2 HSPs)
chr8 (38-99)||(22461497-22461558)
chr8 (23-70)||(22673992-22674040)
[»] chr5 (2 HSPs)
chr5 (112-170)||(11144340-11144398)
chr5 (23-70)||(29138279-29138327)
[»] chr3 (1 HSPs)
chr3 (24-69)||(5213781-5213826)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 22706908 - 22706594
Alignment:
Q  6 cagaacctgtgatgatgtcagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtcaacttctgatgtattttagaaccacttgtcaaatat 105  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  22706908 cagaacttctgatgatgtcagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtcaacttttgatgtactttagaaccacttgtcaaatat 22706809  T
Q  106 tacaatattacaatttaattttggatattcaaaaaatcatccaaataaaaccatatttaattggactagatcgaatctcatgtgaa-nnnnnnnggacca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  22706808 tacaatattacaatttaattttggatattcaaaaaatcatccaaataaaaccatatttaattggactagatcgaatctcatgtgaattttttttggacca 22706709  T
Q  205 gatacctcaaaacatatccaaattgcactgtaaacactcgttattcacatatgattacaccgacacgtattttgtatgaatgttatacagatgaacaact 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||    
T  22706708 gatacctcaaaacatatccaaattgcactgtaaacactcgttattcacatatgattacaccgttacatattttgtatgaatgttatacagatgaacaact 22706609  T
Q  305 aaaatgaatgcacat 319  Q
    |||||||||||||||    
T  22706608 aaaatgaatgcacat 22706594  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 21618466 - 21618515
Alignment:
Q  23 tcagcttctggtaaacttgcttgtgatg-acatgcttctgatgacgtcaa 71  Q
    |||||||||| ||||||||||| ||||| || ||||||||||||||||||    
T  21618466 tcagcttctgataaacttgcttctgatgaacttgcttctgatgacgtcaa 21618515  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 18896470 - 18896377
Alignment:
Q  6 cagaacctgtgatgatgtcagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtcaacttctgatgtattttagaaccacttgtc 99  Q
    |||||| | ||||||||||||| |||||| |||| |||| ||||||  ||||||||||||||||| ||||||||||| || |||||||||||||    
T  18896470 cagaacttctgatgatgtcagcctctggtgaactagcttctgatgaggtgcttctgatgacgtcagcttctgatgtacttcagaaccacttgtc 18896377  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 18615150 - 18615195
Alignment:
Q  54 tgcttctgatgacgtcaacttctgatgtattttagaaccacttgtc 99  Q
    |||||||||||||||||||||||||||  ||| |||||| ||||||    
T  18615150 tgcttctgatgacgtcaacttctgatgattttcagaacctcttgtc 18615195  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 19115338 - 19115410
Alignment:
Q  26 gcttctggtaaacttgcttgtgatgacatgcttctgatgacgtcaacttctgatgtattttagaaccacttgt 98  Q
    ||||||||| | ||||||| ||||||  ||||||||||||||||||||||||||||| |  ||||||||||||    
T  19115338 gcttctggtgaccttgcttctgatgaggtgcttctgatgacgtcaacttctgatgtactccagaaccacttgt 19115410  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 23184212 - 23184165
Alignment:
Q  23 tcagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtca 70  Q
    |||||||||||| ||||||||| ||||||  |||||||||||||||||    
T  23184212 tcagcttctggtgaacttgcttctgatgaggtgcttctgatgacgtca 23184165  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 23595469 - 23595422
Alignment:
Q  23 tcagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtca 70  Q
    |||||||||||| ||||||||| ||||||  |||||||||||||||||    
T  23595469 tcagcttctggtgaacttgcttctgatgaggtgcttctgatgacgtca 23595422  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 26619000 - 26618955
Alignment:
Q  6 cagaacctgtgatgatgtcagcttctggtaaacttgcttgtgatga 51  Q
    |||||| | |||||||||||||||||||| ||||||||| ||||||    
T  26619000 cagaacttctgatgatgtcagcttctggtgaacttgcttctgatga 26618955  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 26618966 - 26618922
Alignment:
Q  54 tgcttctgatgacgtcaacttctgatgtattttagaaccacttgt 98  Q
    |||||||||||| |||| ||||||||||| || ||||||||||||    
T  26618966 tgcttctgatgatgtcagcttctgatgtacttcagaaccacttgt 26618922  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 33074442 - 33074490
Alignment:
Q  23 tcagcttctggtaaacttgcttgtgatg-acatgcttctgatgacgtca 70  Q
    |||||||||| ||||||||||| ||||| || |||||||||||||||||    
T  33074442 tcagcttctgataaacttgcttctgatgaacttgcttctgatgacgtca 33074490  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 17540629 - 17540704
Alignment:
Q  24 cagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtcaacttctgatgtattttagaaccacttgtc 99  Q
    ||||||||||| | ||||||| ||||||  ||||||||||||||||| ||||||||||| |  | |||||||||||    
T  17540629 cagcttctggtgatcttgcttctgatgaggtgcttctgatgacgtcagcttctgatgtactccacaaccacttgtc 17540704  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 17787956 - 17787894
Alignment:
Q  15 tgatgatgtcagcttctggtaaacttgcttgtgatgaca-tgcttctgatgacgtcaacttct 76  Q
    |||||||||||||||||||| |||| |||| |||||| | ||||||||||||||||| |||||    
T  17787956 tgatgatgtcagcttctggtgaactagcttctgatgagagtgcttctgatgacgtcagcttct 17787894  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 15155665 - 15155591
Alignment:
Q  203 cagatacctcaaaacatatccaaattgcactgtaaacactcgttattcacatatgattacaccgacacgtatttt 277  Q
    ||||||||| |||||| || |||| |||||   |||||| | |||||||||||||||||||| ||||| ||||||    
T  15155665 cagataccttaaaacaaattcaaactgcaccccaaacaccctttattcacatatgattacactgacacatatttt 15155591  T

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Target: scaffold0273 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 5859 - 5913
Alignment:
Q  15 tgatgatgtcagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtc 69  Q
    |||||||||||||||||||| ||||||||| ||||||  ||||| ||||||||||    
T  5859 tgatgatgtcagcttctggtgaacttgcttctgatgaggtgcttttgatgacgtc 5913  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 22461558 - 22461497
Alignment:
Q  38 cttgcttgtgatgacatgcttctgatgacgtcaacttctgatgtattttagaaccacttgtc 99  Q
    ||||||| ||||||  ||||||||||||||||| ||||||||||| |  |||||||||||||    
T  22461558 cttgcttctgatgaggtgcttctgatgacgtcagcttctgatgtactccagaaccacttgtc 22461497  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 22673992 - 22674040
Alignment:
Q  23 tcagcttctggtaaacttgcttgtgatg-acatgcttctgatgacgtca 70  Q
    |||||||||| ||||||||||| ||||| || |||||||||||||||||    
T  22673992 tcagcttctgataaacttgcttctgatgaacttgcttctgatgacgtca 22674040  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 11144398 - 11144340
Alignment:
Q  112 attacaatttaattttggatattcaaaaaatcatccaaataaaaccatatttaattgga 170  Q
    |||||||||  |||||  ||||||||||| | |||||||||||||| ||||||||||||    
T  11144398 attacaattgtattttaaatattcaaaaactgatccaaataaaaccgtatttaattgga 11144340  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 29138327 - 29138279
Alignment:
Q  23 tcagcttctggtaaacttgcttgtgatg-acatgcttctgatgacgtca 70  Q
    |||||||||| ||||||||||| ||||| || |||||||||||||||||    
T  29138327 tcagcttctgataaacttgcttctgatgaacttgcttctgatgacgtca 29138279  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 5213781 - 5213826
Alignment:
Q  24 cagcttctggtaaacttgcttgtgatgacatgcttctgatgacgtc 69  Q
    ||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  5213781 cagcttctgataaacttgcttatgatgaactgcttctgatgacgtc 5213826  T

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