View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_low_14 (Length: 331)
Name: NF12241_low_14
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 41723144 - 41722878
Alignment:
| Q |
48 |
ttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttatt |
147 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41723144 |
ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttatt |
41723045 |
T |
|
| Q |
148 |
accatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtatt |
247 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41723044 |
accatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtatt |
41722945 |
T |
|
| Q |
248 |
actgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41722944 |
actgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaat |
41722878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 48 - 312
Target Start/End: Complemental strand, 41718418 - 41718154
Alignment:
| Q |
48 |
ttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttatt |
147 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41718418 |
ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttatt |
41718319 |
T |
|
| Q |
148 |
accatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtatt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41718318 |
accatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtatt |
41718219 |
T |
|
| Q |
248 |
actgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41718218 |
actgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca |
41718154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 27878989 - 27879134
Alignment:
| Q |
1 |
tttttcctctcactattctactatgaacaagtagttgttgtgttactttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatg |
100 |
Q |
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|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
27878989 |
tttttcctctctctattctactaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatg |
27879088 |
T |
|
| Q |
101 |
ctatttataggaccgtaaaagccatgcctcaaccattttcatttat |
146 |
Q |
| |
|
||||||||| | | || ||||||||| |||||| || ||||||| |
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|
| T |
27879089 |
ctatttatactagtgaaagagccatgccccaaccaattgcatttat |
27879134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 30945756 - 30945901
Alignment:
| Q |
1 |
tttttcctctcactattctactatgaacaagtagttgttgtgttactttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatg |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30945756 |
tttttcctctctctattctactaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatg |
30945855 |
T |
|
| Q |
101 |
ctatttataggaccgtaaaagccatgcctcaaccattttcatttat |
146 |
Q |
| |
|
||||||||| | | || ||||||||| |||||| || ||||||| |
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|
| T |
30945856 |
ctatttatactagtgaaagagccatgccccaaccaattgcatttat |
30945901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 30950462 - 30950607
Alignment:
| Q |
1 |
tttttcctctcactattctactatgaacaagtagttgttgtgttactttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatg |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30950462 |
tttttcctctctctattctactaagaacaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatg |
30950561 |
T |
|
| Q |
101 |
ctatttataggaccgtaaaagccatgcctcaaccattttcatttat |
146 |
Q |
| |
|
||||||||| | | || ||||||||| |||||| || ||||||| |
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|
| T |
30950562 |
ctatttatactagtgaaagagccatgccccaaccaattgcatttat |
30950607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 48702130 - 48702228
Alignment:
| Q |
48 |
ttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat |
146 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||| |||||| || ||||||| |
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| T |
48702130 |
ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat |
48702228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 48697441 - 48697539
Alignment:
| Q |
48 |
ttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat |
146 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | | || ||||||||| |||||| || ||||||| |
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|
| T |
48697441 |
ttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat |
48697539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
| Q |
169 |
gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa |
262 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| ||||| | |||| ||||| ||||| ||||||| |||||||| | ||||||||||||||||| |
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|
| T |
48781360 |
gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa |
48781266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 5198964 - 5199062
Alignment:
| Q |
48 |
ttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat |
146 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||| |||||| || ||||||| |
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|
| T |
5198964 |
ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat |
5199062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 825568 - 825504
Alignment:
| Q |
1 |
tttttcctctcactattctactatgaacaagtagttgttgtgttactttgttctggtgttgttac |
65 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||| |
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|
| T |
825568 |
tttttcctctcactattctactaagaacaagtagttgttgtgttacttttttctggcgtagttac |
825504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 830224 - 830160
Alignment:
| Q |
1 |
tttttcctctcactattctactatgaacaagtagttgttgtgttactttgttctggtgttgttac |
65 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||| |
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|
| T |
830224 |
tttttcctctcactattctactaagaacaagtagttgttgtgttacttttttctggcgtagttac |
830160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 54545921 - 54545842
Alignment:
| Q |
1 |
tttttcctctcactattctactatgaacaagtagttgttgtgttactttgttc--tggtgttgttactgatttgggatga |
78 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
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|
| T |
54545921 |
tttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatggtgttactgatttgggatga |
54545842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 2817560 - 2817658
Alignment:
| Q |
48 |
ttgttctggtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat |
146 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | || ||||||||| |||||| || ||||||| |
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|
| T |
2817560 |
ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttat |
2817658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30235057 - 30235004
Alignment:
| Q |
1 |
tttttcctctcactattctactatgaacaagtagttgttgtgttactttgttct |
54 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
30235057 |
tttttcctctcactactctattgagaacaagtagttgttgtgttactttgttct |
30235004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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