View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12241_low_15 (Length: 323)

Name: NF12241_low_15
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12241_low_15
NF12241_low_15
[»] chr4 (1 HSPs)
chr4 (19-311)||(48676725-48677017)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 48676725 - 48677017
Alignment:
Q  19 accctgaccagtttgaaacacattacatcttatcattaagtagaaagtatattgaagataagattcttctcatacatagctaatctttgtggacctgtag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48676725 accctgaccagtttgaaacacattacatcttatcattaagtagaaagtatattgaagataagattcttctcatacatagctaatctttgtggacctgtag 48676824  T
Q  119 aattagtctagtgaactgatatacagcttgtagctatataaatgggtcctagataaattggcaagatgaaatttaaatcacttatagagggttagctaca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48676825 aattagtctagtgaactgatatacagcttgtagctatataaatgggtcctagataaattggcaagatgaaatttcaatcacttatagagggttagctaca 48676924  T
Q  219 caccaatgagaatgacacaaatgggacatggcatttcaattgttggtgttttgttatgtttttagtgtgaaatgagagaaagaaagtcacagg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48676925 caccaatgagaatgacacaaatgggacatggcatttcaattgttggtgttttgttatgtttttagtgtgaaatgagagaaagaaagtcacagg 48677017  T

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