View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12241_low_17 (Length: 314)
Name: NF12241_low_17
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 32309528 - 32309254
Alignment:
| Q |
24 |
ctatcctatgcattaaatataatcaaagcagaaaataaagaattaaagaagaacgaaaaaagattaagtttatttacctggatgaagcaatcatgaaaga |
123 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309528 |
ctatcctatgcagtaaatataatcaaagcagaaaataaagaattaaagaagaactaaaaaagattaagtttatttacctggatgaagcaatcatgaaaga |
32309429 |
T |
|
| Q |
124 |
aaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32309428 |
aaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatcttcagcttgagggcaagaatccctata |
32309329 |
T |
|
| Q |
224 |
gaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
298 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309328 |
gaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32309254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 32814929 - 32815203
Alignment:
| Q |
24 |
ctatcctatgcattaaatataatcaaagcagaaaataaagaattaaagaagaacgaaaaaagattaagtttatttacctggatgaagcaatcatgaaaga |
123 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814929 |
ctatgctatgcagtaaatataatcaaagcagaaaataaagaattaaagaagaactaaaaaagattaagtttatttacctggatgaagcaatcatgaaaga |
32815028 |
T |
|
| Q |
124 |
aaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815029 |
aaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctata |
32815128 |
T |
|
| Q |
224 |
gaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
298 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815129 |
gaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32815203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 32565306 - 32565581
Alignment:
| Q |
24 |
ctatcctatgcattaaatataatcaaagcagaaaataaagaattaaagaagaacgaaaa-aagattaagtttatttacctggatgaagcaatcatgaaag |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32565306 |
ctatcctatgcagtaaatataatcaaagcagataataaagaattaaagaagaatgaaaaaaagattaagttaatttacctggatgaagcaatcatgaaag |
32565405 |
T |
|
| Q |
123 |
aaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctat |
222 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565406 |
aagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctat |
32565505 |
T |
|
| Q |
223 |
agaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
298 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32565506 |
agaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32565581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 95 - 298
Target Start/End: Original strand, 32806563 - 32806766
Alignment:
| Q |
95 |
atttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaata |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32806563 |
atttacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaata |
32806662 |
T |
|
| Q |
195 |
tcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgcta |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32806663 |
tcttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgcta |
32806762 |
T |
|
| Q |
295 |
aaat |
298 |
Q |
| |
|
|||| |
|
|
| T |
32806763 |
aaat |
32806766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 32799640 - 32799812
Alignment:
| Q |
126 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32799640 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
32799739 |
T |
|
| Q |
226 |
aattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
298 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32799740 |
aattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat |
32799812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 99 - 281
Target Start/End: Original strand, 28215614 - 28215796
Alignment:
| Q |
99 |
acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |
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|
| T |
28215614 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatattct |
28215713 |
T |
|
| Q |
199 |
cagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaa |
281 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| | |||||||||| |||||| |
|
|
| T |
28215714 |
cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaa |
28215796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 99 - 261
Target Start/End: Complemental strand, 28220607 - 28220448
Alignment:
| Q |
99 |
acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt |
198 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| | |
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|
| T |
28220607 |
acctggatgaagcaatcatgaaa--agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatattct |
28220511 |
T |
|
| Q |
199 |
cagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattcttt |
261 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28220510 |
cagcttgagggcaagaaaccttatagaaattatattgaagattggaaccatctctgattcttt |
28220448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 32305427 - 32305344
Alignment:
| Q |
57 |
aataaagaattaaagaagaacgaaaaaagattaagtttatttacctggatgaagcaatcatgaaagaaaagacgaagaagagaa |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32305427 |
aataaagaattaaagaagaatgaaaaaagattaagtttatttacctggatgaagcaatcatgaaagaagagacgaagaagagaa |
32305344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 28220356 - 28220316
Alignment:
| Q |
241 |
tggaaccatctctgattctttgattgaaatcaaatggaaaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28220356 |
tggaaccatctctgattctttgattgaaatcaaacggaaaa |
28220316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 290
Target Start/End: Complemental strand, 301642 - 301408
Alignment:
| Q |
55 |
aaaataaagaattaaagaagaacgaaaaaagattaagtttatttacctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctct |
154 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
301642 |
aaaataaagaattaaagaacagtgaaaaaag-ttaataaattttacgtggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctct |
301544 |
T |
|
| Q |
155 |
atgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctg |
254 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
301543 |
atgatcaaggtagatatcggtaacagcggaaggaacaatatcttcagcttgagggctagaatccctatagaaattatattgaagattggaaccatctctg |
301444 |
T |
|
| Q |
255 |
attctttgattgaaatcaaatggaaaagtattggct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
301443 |
attctttgattgaaatcaaatggaaaagtattggct |
301408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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