View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_low_19 (Length: 296)
Name: NF12241_low_19
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 16793258 - 16792990
Alignment:
| Q |
13 |
agcagagatagtgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattg |
112 |
Q |
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| T |
16793258 |
agcagaggtagtgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattg |
16793159 |
T |
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| Q |
113 |
gaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaagtactgtaaatacatgaaattaattaaagaataaatatagccgaatacgaaat |
212 |
Q |
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| T |
16793158 |
gaaagtctcttacaggactatatgatgtttgttgcagcatgtggtaagtactgtaaatacataaaattaattaaagaataaatatagtcgattacgaaat |
16793059 |
T |
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| Q |
213 |
agcttatgcgtaagcacttgcaaaaaacaggttttaacttttaaagtacactctttttcaggttcaaaa |
281 |
Q |
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| T |
16793058 |
agcttatgcataagcacttgcaaaaaacaggttttaacttttaaagtacactctttttcaggttcaaaa |
16792990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 32734721 - 32734837
Alignment:
| Q |
44 |
gtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattggaaagtctcttacaggactatatgatgtttg |
143 |
Q |
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| T |
32734721 |
gtggacgaattcttccaagttccaatagcaattacagaagatttagttcaagaccttgttgatggattggaaatcctcttcctagactacatgaaatttg |
32734820 |
T |
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| Q |
144 |
ttgcagcatgtggtaag |
160 |
Q |
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| T |
32734821 |
ttgcatcatgtggtaag |
32734837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 14876978 - 14876890
Alignment:
| Q |
24 |
tgaaattggcaaagacaactgtggaagagttctttcaaattccaataggaataactgaagaactagttcaagatcttgctaatggattg |
112 |
Q |
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|||| ||||| |||| || |||| ||||||||||||||||||| | | ||||||||| || |||||||||| |||| | |||||||| |
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| T |
14876978 |
tgaatttggcgaagaaaattgtgcaagagttctttcaaattccggttgcaataactgaggatttagttcaagaacttgttgatggattg |
14876890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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