View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_low_20 (Length: 286)
Name: NF12241_low_20
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 7008114 - 7008386
Alignment:
| Q |
10 |
agatgaataattgatcttatacgtttggctagtcataagagaaaagaagtccataatttaatttgtcctaagccaaaatgactaggatgcacacaatttc |
109 |
Q |
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| T |
7008114 |
agatgaataatatatcttatacgtttggttagtcataagagaaaagaagtccataatttaatttgtcctaagccaaaatgactaggatgcacacaatttc |
7008213 |
T |
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| Q |
110 |
ttgttattctatttgagtaatattttgcactcatgttgtggggaagcaatgaacatccccgaccaagtatgaatgaatggtgtgaaactttaaacagaat |
209 |
Q |
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| T |
7008214 |
ttgttattctatttgagtaatattttgcactcatgttgtggggaagcaatgaacatccccgaccaagtatgaatgaatggtgtgaaactttaaacagaat |
7008313 |
T |
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| Q |
210 |
agtttaataaaacaagaaaattaatgttaacattgtcgtacactcataacctatgaagcacagacacagacac |
282 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7008314 |
agtttaataaaacaagaaaattaatgttaatattgtcgtacactcataacctatgaagcacagacacagacac |
7008386 |
T |
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