View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_low_22 (Length: 265)
Name: NF12241_low_22
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_22 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 2160273 - 2160502
Alignment:
| Q |
21 |
tagtcttaaatcttaatcatcaaaatattaaatttcttaagacacaaaaagcgatgagtaaagggagttagattctatggagggcaatcttaacacttta |
120 |
Q |
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| T |
2160273 |
tagtcttaaatcttaatcatcaaaatattaaatttcttaagacacaaaaagcgatgagtaaagggagttagattctatggagggcaatcttaacacttta |
2160372 |
T |
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| Q |
121 |
gaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagataatgaagtaccaaaaactcaaa |
220 |
Q |
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| T |
2160373 |
gaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagataatgaagcaccaaaaactcaaa |
2160472 |
T |
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| Q |
221 |
atttggacctcaaaatatcgaggttctgtg |
250 |
Q |
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| T |
2160473 |
atttggacctcaaaatatcgaggttctgtg |
2160502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 2165638 - 2165789
Alignment:
| Q |
107 |
atcttaacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagat-------- |
198 |
Q |
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| T |
2165638 |
atcttaacactcgagaggtcatgttctaattttaaaaagttga-ccataataaaaggaaagtgttgttggaccctagaaattaattgaagatattatata |
2165736 |
T |
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| Q |
199 |
-------aatgaagtaccaaaaactcaaaatttggacctcaaaatatcgaggt |
244 |
Q |
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| T |
2165737 |
tttaccaaatgaagcaccaaaaactcaaaatttggacctcaaaatatcgaggt |
2165789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 2177271 - 2177422
Alignment:
| Q |
107 |
atcttaacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagat-------- |
198 |
Q |
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| T |
2177271 |
atcttaacactcgagaggtcatgttctaattttaaaaagttga-ccataataaaaggaaagtgttgttggaccctagaaattaattgaagatattatata |
2177369 |
T |
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| Q |
199 |
-------aatgaagtaccaaaaactcaaaatttggacctcaaaatatcgaggt |
244 |
Q |
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| T |
2177370 |
tttaccaaatgaagcaccaaaaactcaaaatttggacctcaaaatatcgaggt |
2177422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 16771 - 16621
Alignment:
| Q |
107 |
atcttaacactttagaggtcatgttctaattttaaaaattggacccctaattaaaggaaagtgttgtaggatcctagaaattatttgaagat-------- |
198 |
Q |
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||||||||||| ||||||||||||||||||||||||| | |||| |||| ||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
16771 |
atcttaacactcgagaggtcatgttctaattttaaaaagttgacca-taataaaaggaaagtgttgttggaccctagaaattaattgaagatattatata |
16673 |
T |
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| Q |
199 |
------aatgaagtaccaaaaactcaaaatttggacctcaaaatatcgaggt |
244 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16672 |
ttaccaaatgaagcaccaaaaactcaaaatttggacctcaaaatatcgaggt |
16621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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