View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_low_25 (Length: 254)
Name: NF12241_low_25
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 3161344 - 3161568
Alignment:
| Q |
19 |
atttctcatatattttgtagttagtttccctcctgcatctaactcaaagttcattttgttgggttcaataaactaaaccagaaaacacctaatctaaaag |
118 |
Q |
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| T |
3161344 |
atttctcatatattttgtagttagtttccctcctgcatctaactcaaagttcattttgttgggttcaataaactaaaccagaaaacacctaatcaaaaag |
3161443 |
T |
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| Q |
119 |
gagaaaatctttgtacnnnnnnnnnccatacctattggttaaacctaaaatcactattactttgttctaactcttttccttcctttcactggtgttgcag |
218 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3161444 |
gagaaaatttttgtacaaaaaaaaaccatacctattggttaaacctaaaatcactattactttgttctaactcttttccttcctttcactggtgttgcag |
3161543 |
T |
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| Q |
219 |
tcttttggcttgaagtcacaggttc |
243 |
Q |
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|||||||||||||| |||||||||| |
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| T |
3161544 |
tcttttggcttgaactcacaggttc |
3161568 |
T |
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