View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12241_low_3 (Length: 718)
Name: NF12241_low_3
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_3 |
 | |
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| [»] scaffold0009 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 19577663 - 19578062
Alignment:
| Q |
18 |
atgaagatgggggaatttgaaaatttgaggaggcgcggcgtgaaaatttggcggtattgttatgannnnnnn-ggatttggatttggatttgaatgaaag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
19577663 |
atgaagatgggggaatttgaaaatttgaggaggcgcggcgtgaaaatttggcggtattgttgtgattttttttggatttggatttggatttgaatgaaag |
19577762 |
T |
|
| Q |
117 |
tgattaattcatgatgactttgacacgcggtgagggaggggatatggtgtggagggatgtatcgtaagggaatgggtgtgatcttggattga-------- |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19577763 |
tgattaattcatgatgactttgacacgcggtgagggaggggatatggtgtggagggatgtatcgtaagggaatgggtgtgatcttggattgacatgactg |
19577862 |
T |
|
| Q |
209 |
----ctattgactgactatggatcctgctcttcaaattttaactctctagattttagttagttgtttttcatttttctttgacaaagaattttagtctta |
304 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
19577863 |
ttgactattgactgactatggatcgtgctcttcaaattttaactctctagattttagttagctgtttttcatttttctttgacaaagaattttagtcgta |
19577962 |
T |
|
| Q |
305 |
gttattaaaaataataaaattaaatcaagctcttaaaattgaacccgtttannnnnnnggttcaccaaacgtcgtagaagacaacaaaattattcaatat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
19577963 |
gttattaaaaataataaaattaaatcaagctcttaaaattgaacccgttt---tttttggttcatcaaacatcgtagaagacaa-aaaattattcaatat |
19578058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 513
Target Start/End: Complemental strand, 46194119 - 46194021
Alignment:
| Q |
415 |
gtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaat |
513 |
Q |
| |
|
||||||||| ||||| |||||| ||| | ||||| ||||||||||| ||||||||| |||||||| | ||||||||||||||| ||||||||||| |
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|
| T |
46194119 |
gtttgtttcacctctgtaaattagattcttaggaatctaagatgggaattatttattcttatgtttggtatacatgcatacaaaaatattccaaggaat |
46194021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 513
Target Start/End: Complemental strand, 36366969 - 36366864
Alignment:
| Q |
408 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcca |
507 |
Q |
| |
|
|||||| ||||||||| |||| |||||| ||||| ||||| ||||||| ||| |||||||||| |||||||| | ||||||||||||||| || || |
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|
| T |
36366969 |
agggggtgtttgtttcacctcagtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaatatttca |
36366870 |
T |
|
| Q |
508 |
aggaat |
513 |
Q |
| |
|
|||||| |
|
|
| T |
36366869 |
aggaat |
36366864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 403 - 713
Target Start/End: Original strand, 41415600 - 41415910
Alignment:
| Q |
403 |
atcttagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaagg |
502 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
41415600 |
atctaagggggcgtttgtttcccctctacaaaataagttcctgggaatgtaagatgggaactatttattgcaatgtttggtacacatgcatacaaaaagg |
41415699 |
T |
|
| Q |
503 |
ttccaaggaattaattatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaa |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41415700 |
ttccaaggaattaattatacccggtaattatttttaactatattctcccattttttattcccagcacaaaggatgggaatgacttattcccagcggttaa |
41415799 |
T |
|
| Q |
603 |
catccattaatatctgaaaagttcatttctaccccttgtaaccgcatgacatcccacgtttctccctacttatgtgtcacgttttctttttgtctttgca |
702 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||| || |
|
|
| T |
41415800 |
catccattaatatctcaaaagttcatttctaccccttgtaaccgcatggcatcccacgtttctacctacttatgtgttacgttttcttcttgtctttaca |
41415899 |
T |
|
| Q |
703 |
caggttctgct |
713 |
Q |
| |
|
|||||| |||| |
|
|
| T |
41415900 |
caggttttgct |
41415910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 410 - 531
Target Start/End: Complemental strand, 55448037 - 55447916
Alignment:
| Q |
410 |
ggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaag |
509 |
Q |
| |
|
|||||||||||||| | |||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
55448037 |
ggggcgtttgtttcacttctacaaaataagtttctgagaatgtaagataggaactatttattccaatgtttgatacacatgcataaaaaaaggttataag |
55447938 |
T |
|
| Q |
510 |
gaattaattatacccggtaatt |
531 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
55447937 |
gaattaattatacccggtaatt |
55447916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 518 - 713
Target Start/End: Complemental strand, 55447896 - 55447702
Alignment:
| Q |
518 |
tatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccatt-aatatc |
616 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||| || |
|
|
| T |
55447896 |
tatacccgataattattttcaactat--tatcccattttttattcccaacccaaaggatgggaatcacttattcccagcggttaacatccattaaatgtc |
55447799 |
T |
|
| Q |
617 |
tgaaaagttcatttctacccctt--gtaaccgcatgacatcccacgtttctccctacttatgtgtcacgttttctttttgtctttgcacaggttctgct |
713 |
Q |
| |
|
|||| ||||||||||||| || ||||| |||| || ||||||| ||| |||| ||||||| ||||||||||| || |||| |||||||| |||| |
|
|
| T |
55447798 |
acaaaatttcatttctaccctttaagtaactgcat--caccccacgtctctgcctatttatgtgccacgttttcttcctgcctttacacaggttttgct |
55447702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 408 - 513
Target Start/End: Original strand, 24565335 - 24565440
Alignment:
| Q |
408 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcca |
507 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| ||||| ||||| ||||||||||| |||||||||| |||||||| | ||||||||||||||| ||||| |
|
|
| T |
24565335 |
agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgggaattatttattcctatgtttggtatacatgcatacaaaaatattcca |
24565434 |
T |
|
| Q |
508 |
aggaat |
513 |
Q |
| |
|
|||||| |
|
|
| T |
24565435 |
aggaat |
24565440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 435 - 713
Target Start/End: Complemental strand, 41418503 - 41418229
Alignment:
| Q |
435 |
ttaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattatacccggtaattatt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
41418503 |
ttaagttcctgggaatgtaagatgggaactatttattccaatatttggtacacatgcatacaaaaaggttccaagaaattaattatatccggtaattatt |
41418404 |
T |
|
| Q |
535 |
tttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccattaatatctgaaaagttcatttctac |
634 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41418403 |
tttaactatattatcccatattttattcccaacagaaaggatgggaatgacttattccaagcagttaacatccattaatatctcaaaagttcatttctac |
41418304 |
T |
|
| Q |
635 |
cccttgtaaccgcatgacatcccacgtttctccctacttatgtgtcacgttttctttttgtctttgcacaggttctgct |
713 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
41418303 |
cccttgtaaccgcatggcatcccacattt----ctacttatgtgtcacgttttctttttgtctttacataggttttgct |
41418229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 45355251 - 45355342
Alignment:
| Q |
429 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattat |
520 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
45355251 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat |
45355342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 45368992 - 45369083
Alignment:
| Q |
429 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattat |
520 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
45368992 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat |
45369083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 524
Target Start/End: Original strand, 49525807 - 49525906
Alignment:
| Q |
425 |
cctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattataccc |
524 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||||| || ||||||| | |||| | ||||||| ||| |||||||||||||||||| |
|
|
| T |
49525807 |
cctctacaaactaagttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattataccc |
49525906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 18902 - 18796
Alignment:
| Q |
407 |
tagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcc |
506 |
Q |
| |
|
||||||| ||||||||| ||||| |||||| ||||| ||||| |||| |||||| |||||||||| |||||||| | ||||||||||||||| ||| |
|
|
| T |
18902 |
tagggggtgtttgtttcacctctgtaaattagattcctaggaatctaaggtgggaattatttattcctatgtttggtatacatgcatacaaaaatattca |
18803 |
T |
|
| Q |
507 |
aaggaat |
513 |
Q |
| |
|
||||||| |
|
|
| T |
18802 |
aaggaat |
18796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 408 - 513
Target Start/End: Complemental strand, 6813479 - 6813374
Alignment:
| Q |
408 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcca |
507 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| ||||| ||||| ||||||| ||| |||||||||| |||||||| | ||||||||||||||| || || |
|
|
| T |
6813479 |
agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaatatttca |
6813380 |
T |
|
| Q |
508 |
aggaat |
513 |
Q |
| |
|
|||||| |
|
|
| T |
6813379 |
aggaat |
6813374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 429 - 526
Target Start/End: Complemental strand, 17902338 - 17902241
Alignment:
| Q |
429 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattatacccgg |
526 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||| ||||| |||||| ||||| |
|
|
| T |
17902338 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccagggaatgaattattcccgg |
17902241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 7968369 - 7968452
Alignment:
| Q |
406 |
ttagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgca |
492 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |||| |||| ||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
7968369 |
ttagggggcgtttgtttcacctatacaaattaaattcc---gaatctaagatgggaataatttattcccatgtttgatacacatgca |
7968452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 520
Target Start/End: Original strand, 8037860 - 8037962
Alignment:
| Q |
415 |
gtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaatt |
514 |
Q |
| |
|
||||||||| |||| | ||||| | |||| ||||| ||||||||||| |||||||| |||||||| | ||||||| ||||||| || ||||||||| |
|
|
| T |
8037860 |
gtttgtttcacctccaaaaatttaattcccaggaatttaagatgggaa---tttattcccatgtttggcagacatgcacacaaaaatatttcaaggaatt |
8037956 |
T |
|
| Q |
515 |
aattat |
520 |
Q |
| |
|
|||||| |
|
|
| T |
8037957 |
aattat |
8037962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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