View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12241_low_4 (Length: 538)
Name: NF12241_low_4
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 8797712 - 8798066
Alignment:
| Q |
16 |
gttttttggattctactactggcaaaagcctgcacagatttcctttggaaaatgagtgttaatctctctttccacacattttcagcatttaatgaagaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8797712 |
gttttttggattctactactggcaaaagcctgcacagatttcctttggaaaatgagtgttaatctctctttccacacattttcagcatttaatgaagaaa |
8797811 |
T |
|
| Q |
116 |
tgaatctctctttgtctctctagctagtggataatacaaggttttttatgaaggagcgagaaagcagtagagtgcacgcggggtatgtagagagagagat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8797812 |
tgaatctctctttgtctctctagctagtggataatacaaggttttttatgaaggagtgagaaagcagtagagtgcacgcgggatatgtagagagagagat |
8797911 |
T |
|
| Q |
216 |
gaaggttgagttacagaagaagggttagtgtgaggcattggtgccnnnnnnnggttttaccttcccaatgaaaactctaccttcctttttctgcactgcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8797912 |
gaaggttgagttacagaagaagggttagtgtgaagcattggtgccaaaaaaaggttttaccttcccaatgaaaactctaccttcctttttctgcactgcc |
8798011 |
T |
|
| Q |
316 |
actgatacccctgccatacaaaagcagtggagtgagagacaagagaacaagcaag |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8798012 |
actgatacccctgccatacaaaagcagtggagtgagagacaagagaacaagcaag |
8798066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 8798096 - 8798222
Alignment:
| Q |
400 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttacctactactactatgctgatgatgatgaatatattgg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8798096 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttacctactactactatgctgatgatgatgaatatattgg |
8798195 |
T |
|
| Q |
500 |
ggaagataggttcatttcacagggcac |
526 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
8798196 |
ggaagataggttcatttcatagggcac |
8798222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University