View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_low_5 (Length: 513)
Name: NF12241_low_5
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 37 - 435
Target Start/End: Original strand, 31532529 - 31532932
Alignment:
| Q |
37 |
gataaagatctattaatccttaaaataacataat-----tgactattttagtcgtcaaaagctcggctccatggtcttagcatgtgccttatgtttgtta |
131 |
Q |
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| T |
31532529 |
gataaagacctattaacccttaaaataacataatgatgttgactattttagtcgtcaaaagcttggctccatggtcttagcatgtgccttatgtttgtta |
31532628 |
T |
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| Q |
132 |
tatcaaataatatggtgtaaatatataccaaaactgttccatannnnnnnnnnnnnnnnnnnnnnnnngattgattgggtccccaattttaatagaataa |
231 |
Q |
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| T |
31532629 |
tatcaaataatctggtgtaaatatataccaaaactgttccataattttatttttattatttttttttagattgattgggtccccaattttaatagaataa |
31532728 |
T |
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| Q |
232 |
ccaaatcataattataacatatattttcaatgtgattgatcaagaatgatatacctttatgattagagagatcgtctcaatgggagagcaaaaattggag |
331 |
Q |
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| T |
31532729 |
ccaaatcataattataacatatattttcaatgtgattgatcaagaatgatatacctttatgattagagagatcgtctctatgggagagcaaaaattagag |
31532828 |
T |
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| Q |
332 |
gatgagtatagtcattgccgtctaagnnnnnnnnctcacattattaatcgtctcatgagacaacaattaaatagctaaacaattgaatacataactcttt |
431 |
Q |
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| T |
31532829 |
gatgagtatagtcattgccgtctaagttttttttctcacattatcaatcgtctcatgagacaacaattaaatagctaaacaattgaatacataactcttt |
31532928 |
T |
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| Q |
432 |
tgtc |
435 |
Q |
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|||| |
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| T |
31532929 |
tgtc |
31532932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 31532953 - 31533008
Alignment:
| Q |
445 |
taagtacataaatctctcttattaggtttaacaaagtaattcatctcatcacaggttc |
502 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
31532953 |
taagtacataaatctc--ttattaggtttaacaaagtaattcatctcatcaccggttc |
31533008 |
T |
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