View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12241_low_7 (Length: 492)
Name: NF12241_low_7
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12241_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Complemental strand, 47117816 - 47117358
Alignment:
| Q |
20 |
aattaccactggtgcgggggaacgaggtcttgcagattgaggttgttcttgagcagagcgaaatttctaataaaacaacaaaccacaagtttcaaatttc |
119 |
Q |
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| T |
47117816 |
aattaccactggtgcgggggaacgaggtcttgcagattgaggttgttcttgagcagagcgaaatttctaataaaacaacaaaccacaagtttcaaatttc |
47117717 |
T |
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| Q |
120 |
caaacaaaaaactatgatctaaaatttaagcggttctatttactgaagccaattataccattggtgaccgtgatcttgcagatagaggttgttcctgagt |
219 |
Q |
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| T |
47117716 |
caaacaaaaaactatgatctaaaatttaagcggttctatttactgaagccaattataccattggtgaccgtgatcttgcagatagaggttgttcctgagt |
47117617 |
T |
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| Q |
220 |
ggagcgaattgactgatagaaacaacacaaaaattagatgtttcaaaatttcatactaattttcaaaataatgtgattagtagtaaattcaactcgcatg |
319 |
Q |
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| T |
47117616 |
agagcgaattgactaatagaaacaacacaaaaattagatgtttcaaaatttcatactaattttcaaaataatgtgattagtagtaaattcaactcgcatg |
47117517 |
T |
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| Q |
320 |
aagcttaccataggtgaacgaggtctcattggtggaggttgttcttgagtactcttaactgtctaatagaatgcaacaacatcatcgaattggatgaatg |
419 |
Q |
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| T |
47117516 |
aagcttaccataggtgaacgaggtctcattggtggaggttgttcttgagtactcttaactgtctaatagaatgcaacaacatcatcgaattggatgaatg |
47117417 |
T |
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| Q |
420 |
aacattcaacaacatatcaatataaatacaagtaagaaaggaataatagctaccacagg |
478 |
Q |
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| T |
47117416 |
aacattcaacaacatatcaatataaatacaagtaagaaagaaataatagctaccacagg |
47117358 |
T |
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