View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12241_low_9 (Length: 478)

Name: NF12241_low_9
Description: NF12241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12241_low_9
NF12241_low_9
[»] chr3 (58 HSPs)
chr3 (18-464)||(2441751-2442197)
chr3 (120-177)||(2644357-2644414)
chr3 (120-177)||(2659147-2659204)
chr3 (120-176)||(2696727-2696783)
chr3 (120-176)||(4142129-4142185)
chr3 (120-176)||(4157939-4157995)
chr3 (110-176)||(3754600-3754666)
chr3 (127-177)||(13498223-13498273)
chr3 (96-177)||(7942484-7942565)
chr3 (125-177)||(754609-754661)
chr3 (125-177)||(2456248-2456300)
chr3 (125-177)||(7324431-7324483)
chr3 (276-396)||(12132889-12133009)
chr3 (113-176)||(989396-989459)
chr3 (125-176)||(1891064-1891115)
chr3 (121-176)||(7432050-7432105)
chr3 (110-176)||(1940564-1940630)
chr3 (124-174)||(2459277-2459327)
chr3 (125-175)||(2492083-2492133)
chr3 (125-175)||(2631358-2631408)
chr3 (127-177)||(9561987-9562037)
chr3 (113-179)||(12133094-12133160)
chr3 (120-177)||(2476633-2476690)
chr3 (120-177)||(2502147-2502204)
chr3 (120-177)||(7334234-7334291)
chr3 (127-176)||(9608346-9608395)
chr3 (276-460)||(13479324-13479508)
chr3 (123-175)||(768327-768379)
chr3 (125-177)||(771499-771551)
chr3 (120-176)||(803213-803269)
chr3 (125-177)||(7430536-7430588)
chr3 (275-395)||(7432177-7432297)
chr3 (125-177)||(9565829-9565881)
chr3 (125-177)||(37753345-37753397)
chr3 (125-177)||(43991959-43992011)
chr3 (113-176)||(968671-968734)
chr3 (113-176)||(1931142-1931205)
chr3 (122-176)||(956381-956435)
chr3 (125-175)||(7442977-7443027)
chr3 (115-176)||(1007461-1007522)
chr3 (120-176)||(1022489-1022545)
chr3 (125-177)||(1437995-1438046)
chr3 (125-173)||(9587185-9587233)
chr3 (123-175)||(9594622-9594674)
chr3 (125-164)||(746383-746422)
chr3 (120-167)||(2686307-2686354)
chr3 (114-176)||(1936969-1937031)
chr3 (124-174)||(7398178-7398228)
chr3 (124-174)||(23197014-23197064)
chr3 (129-174)||(997578-997623)
chr3 (129-174)||(1013968-1014013)
chr3 (291-332)||(2678541-2678582)
chr3 (291-340)||(3754460-3754509)
chr3 (291-340)||(4142279-4142328)
chr3 (125-177)||(783799-783851)
chr3 (120-176)||(792899-792955)
chr3 (120-176)||(2678394-2678450)
chr3 (124-172)||(3746012-3746060)
[»] chr7 (4 HSPs)
chr7 (101-460)||(1078136-1078489)
chr7 (123-172)||(3927063-3927112)
chr7 (275-330)||(24723212-24723267)
chr7 (126-176)||(1421170-1421220)
[»] chr2 (12 HSPs)
chr2 (123-176)||(7160752-7160805)
chr2 (122-166)||(6538844-6538888)
chr2 (123-176)||(7156190-7156243)
chr2 (124-176)||(36577366-36577418)
chr2 (123-173)||(7168688-7168738)
chr2 (123-176)||(7174371-7174424)
chr2 (123-176)||(11237693-11237746)
chr2 (125-176)||(33038160-33038211)
chr2 (125-175)||(33020314-33020364)
chr2 (123-176)||(7199976-7200029)
chr2 (125-177)||(33026656-33026708)
chr2 (125-177)||(34560917-34560969)
[»] chr5 (16 HSPs)
chr5 (124-176)||(11081813-11081865)
chr5 (120-176)||(23766857-23766913)
chr5 (120-176)||(23816705-23816761)
chr5 (120-176)||(23769641-23769697)
chr5 (120-176)||(23819489-23819545)
chr5 (127-177)||(20292994-20293044)
chr5 (147-183)||(2067074-2067110)
chr5 (280-334)||(1427824-1427878)
chr5 (127-177)||(20301442-20301492)
chr5 (127-177)||(20305855-20305905)
chr5 (127-177)||(20310259-20310309)
chr5 (34-79)||(11081910-11081955)
chr5 (120-176)||(23732167-23732223)
chr5 (121-176)||(1427689-1427744)
chr5 (291-344)||(2067212-2067265)
chr5 (120-176)||(23861021-23861077)
[»] chr6 (14 HSPs)
chr6 (117-165)||(176345-176393)
chr6 (113-173)||(370773-370833)
chr6 (120-166)||(1442103-1442149)
chr6 (125-175)||(24417486-24417536)
chr6 (122-172)||(7564748-7564798)
chr6 (124-177)||(1470922-1470975)
chr6 (127-177)||(9819831-9819881)
chr6 (124-174)||(19119065-19119115)
chr6 (124-174)||(19126359-19126409)
chr6 (124-177)||(1459540-1459593)
chr6 (127-172)||(9703888-9703933)
chr6 (124-176)||(4183000-4183052)
chr6 (124-176)||(4743844-4743896)
chr6 (124-176)||(17368366-17368418)
[»] chr4 (5 HSPs)
chr4 (114-172)||(20016174-20016232)
chr4 (114-176)||(20019761-20019823)
chr4 (113-173)||(22672115-22672175)
chr4 (124-166)||(55419792-55419834)
chr4 (276-342)||(20019896-20019962)
[»] scaffold0044 (1 HSPs)
scaffold0044 (125-172)||(89147-89194)
[»] scaffold0015 (1 HSPs)
scaffold0015 (126-176)||(32330-32380)
[»] chr1 (7 HSPs)
chr1 (122-172)||(51381452-51381502)
chr1 (124-176)||(51858606-51858658)
chr1 (135-176)||(23896147-23896188)
chr1 (127-176)||(24629213-24629262)
chr1 (127-176)||(51782799-51782848)
chr1 (124-176)||(51756749-51756801)
chr1 (124-176)||(51854947-51854999)


Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 2442197 - 2441751
Alignment:
Q  18 attaaacgcccctgtcaacttcaacaacacttgatcatcctcaaataaatataccggcttggcagaaatatgagatacacctcgatctaccctgcaagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442197 attaaacgcccctgtcaacttcaacaacacttgatcatcctcaaataaatataccggcttggcagaaatatgagatacacctcgatctaccctgcaagaa 2442098  T
Q  118 agagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatccttcataaccgaatcaaaatcactatcaccataagtcacgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2442097 agagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatccttcagaaccgaatcaaaatcactatcaccataagtcacgc 2441998  T
Q  218 acaaacaatctctcaacacaaacaaggccaagaagttacacacatttannnnnnnagaatcaggaagcaataccttttgataagactctttctccaaatc 317  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  2441997 acaaacaatccctcaacacaaacaaggccaagaagttacacacatttacccccccagaatcaggaagcaataccttttgataagactctttctccaaatc 2441898  T
Q  318 aaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaattaattgtgtcactcacaaatttacctgattgctcaggaaggata 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441897 aaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaattaattgtgtcactcacaaatttacctgattgctcaggaaggata 2441798  T
Q  418 ctaccaaaagtaaactcctgaatgtttttccaacaattggtactaga 464  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  2441797 ctaccaaaagtaaactcctgaatgtttttccaacaattggtaataga 2441751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 2644357 - 2644414
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2644357 agtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2644414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 2659147 - 2659204
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2659147 agtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 2696727 - 2696783
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 2696783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 4142129 - 4142185
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  4142129 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 4157939 - 4157995
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 3754666 - 3754600
Alignment:
Q  110 tgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| || ||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  3754666 tgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 13498273 - 13498223
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcc 13498223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 7942565 - 7942484
Alignment:
Q  96 acctcgatctaccctgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||| || || ||| || | || |||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  7942565 acctcgatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatcc 7942484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 754609 - 754661
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatcc 754661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 2456300 - 2456248
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcc 2456248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 7324431 - 7324483
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaacatcc 7324483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 276 - 396
Target Start/End: Complemental strand, 12133009 - 12132889
Alignment:
Q  276 atcaggaagcaataccttttgataagactctttctccaaatcaaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaatta 375  Q
    ||||||| |||| |||||| || ||||||||||  ||||||||||||||| |||||| || |||||| |   ||||| |||||||  ||  |||||||||    
T  12133009 atcaggaggcaaaacctttcgaaaagactcttttcccaaatcaaaagaaacaataaaacgaggactttttggatcaagatcaatagaggttaaccaatta 12132910  T
Q  376 attgtgtcactcacaaattta 396  Q
    || ||| ||||||||||||||    
T  12132909 atcgtgccactcacaaattta 12132889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 989459 - 989396
Alignment:
Q  113 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| | |||||||||    
T  989459 aagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatc 989396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 1891064 - 1891115
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatc 1891115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 7432050 - 7432105
Alignment:
Q  121 gtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||    
T  7432050 gtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatc 7432105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 1940564 - 1940630
Alignment:
Q  110 tgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||| |||||||||||||||||| || |||| ||||||||  |||||||||| |||||||||    
T  1940564 tgcaagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatc 1940630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 2459327 - 2459277
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 174  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 2492133 - 2492083
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 175  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 175  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 9561987 - 9562037
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatcc 9562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 12133160 - 12133094
Alignment:
Q  113 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcctt 179  Q
    |||||| | |||||||||||||||| || ||| |||||||||||||| |||||| ||||||||||||    
T  12133160 aagaaacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatcctt 12133094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 2476690 - 2476633
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||| |||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  2476690 agtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatcc 2476633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 2502204 - 2502147
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||| ||| |||||||||| | || |||||||||||||||||||||||||||||||||    
T  2502204 agtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 7334234 - 7334291
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||| |||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  7334234 agtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatcc 7334291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 9608346 - 9608395
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatc 9608395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 460
Target Start/End: Complemental strand, 13479508 - 13479324
Alignment:
Q  276 atcaggaagcaataccttttgataagactctttctccaaatcaaaagaaataataaagcgtggacttctcccatc-aaaatcaataacggccaaccaatt 374  Q
    ||||||| |||| || |||| |||||| ||||||  |||||||||||||| ||| |||||||||||| | |  ||  |||||| ||  ||||||||||||    
T  13479508 atcaggaggcaaaactttttcataagattctttccgcaaatcaaaagaaacaatgaagcgtggactt-tgcagtcttaaatcagtagaggccaaccaatt 13479410  T
Q  375 aattgtgtcactcacaaatttacctgattgctcaggaaggatactaccaaaagtaaactcctgaatgtttttccaacaattggtac 460  Q
    |||  || ||||||||||||| || |||| ||||  | | |||  |||||| | ||||||||||||| |||||||| ||| |||||    
T  13479409 aatcctgccactcacaaattttccagatttctcaacaggcataacaccaaagggaaactcctgaatggttttccaaaaatgggtac 13479324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 768327 - 768379
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacat 175  Q
    |||||||||||||||||| |||| |||||| ||||| ||||||||||||||||    
T  768327 gaacaatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 771499 - 771551
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||||| ||| |||||||||| |||||||||| ||||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcc 771551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 803213 - 803269
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||| ||||||||||| |||||||||||||| || ||||||| |||||||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatc 803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 7430536 - 7430588
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    ||||||||||| |||| | |||||||||||||| |||||||||||||||||||    
T  7430536 acaatttagtctaagactttttatttccatacttcttcataatccaaacatcc 7430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 395
Target Start/End: Original strand, 7432177 - 7432297
Alignment:
Q  275 aatcaggaagcaataccttttgataagactctttctccaaatcaaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaatt 374  Q
    ||||||| ||||| |||| |||||| || || ||| |||||||| |||||| |||||||  |||||||  || || ||| ||||||  || |||||||||    
T  7432177 aatcaggtagcaaaacctcttgatatgattccttccccaaatcataagaaacaataaagtatggactttccctataaaattcaatagaggtcaaccaatt 7432276  T
Q  375 aattgtgtcactcacaaattt 395  Q
    ||||||| |||| ||||||||    
T  7432277 aattgtgccacttacaaattt 7432297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 9565829 - 9565881
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||||| |||| || ||| ||||||||||||||||||||||||    
T  9565829 acaatttagtccaagactcttgatctccgtactccttcataatccaaacatcc 9565881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 37753345 - 37753397
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||||| ||||| |||||||| |||| ||||||||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatcc 37753397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 43992011 - 43991959
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    ||||||| |||||||| ||| |||||||||| |||||||||||||||||||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaacatcc 43991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 968734 - 968671
Alignment:
Q  113 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| |||||| ||||||||||| || |||||||||||||  |||||||||| |||||||||    
T  968734 aagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatc 968671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 1931142 - 1931205
Alignment:
Q  113 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| |||||||||||||||||| || |||||||||||||  ||| |||||| |||||||||    
T  1931142 aagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatc 1931205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 956435 - 956381
Alignment:
Q  122 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||  |||||| ||||| |||||||| ||||||||||||||||||||    
T  956435 tgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 7442977 - 7443027
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 175  Q
    |||| ||||||||||| |||| |||||||||||||||||| ||||||||||    
T  7442977 acaacttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 1007522 - 1007461
Alignment:
Q  115 gaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||| |||||||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  1007522 gaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatc 1007461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 1022545 - 1022489
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  1022545 agtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatc 1022489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 1438046 - 1437995
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  1438046 acaatttaatccaagagtctttatttccatattccttcataa-ccaaacatcc 1437995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 9587185 - 9587233
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaac 173  Q
    ||||||| |||||||  |||||||||||||| |||||||||||||||||    
T  9587185 acaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 9594622 - 9594674
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacat 175  Q
    |||||||||||||||||| |||| |||||| ||||  ||||||||||||||||    
T  9594622 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 9594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 746383 - 746422
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcat 164  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  746383 acaatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 2686307 - 2686354
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataat 167  Q
    ||||||||||||| ||||||| ||||| |||||||| |||||||||||    
T  2686307 agtgaacaatttattccaagactctttttttccatattccttcataat 2686354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 1936969 - 1937031
Alignment:
Q  114 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||| |||||||||||||| ||| || |||||||||  ||| |||||||||| |||||||||    
T  1936969 agaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatc 1937031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 7398178 - 7398228
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 174  Q
    ||||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  7398178 aacaatttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 23197064 - 23197014
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 174  Q
    ||||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  129 tttagtccaagaatctttatttccatactccttcataatccaaaca 174  Q
    |||||||||||| |||||||||||||| |||||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  129 tttagtccaagaatctttatttccatactccttcataatccaaaca 174  Q
    |||||||||||| |||||||||||||| |||||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 2678541 - 2678582
Alignment:
Q  291 cttttgataagactctttctccaaatcaaaagaaataataaa 332  Q
    ||||||||||||||||||  ||||||||||||||| ||||||    
T  2678541 cttttgataagactcttttgccaaatcaaaagaaacaataaa 2678582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 3754509 - 3754460
Alignment:
Q  291 cttttgataagactctttctccaaatcaaaagaaataataaagcgtggac 340  Q
    ||||||||| ||||| ||  ||||||||||||||| ||||||||||||||    
T  3754509 cttttgatatgactcctttgccaaatcaaaagaaacaataaagcgtggac 3754460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 4142279 - 4142328
Alignment:
Q  291 cttttgataagactctttctccaaatcaaaagaaataataaagcgtggac 340  Q
    ||||||||||||||| ||  ||||||||||||||| |||||||| |||||    
T  4142279 cttttgataagactcctttgccaaatcaaaagaaacaataaagcatggac 4142328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 783799 - 783851
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    ||||||||||||| |  | | |||||||||| |||||||||||||||||||||    
T  783799 acaatttagtccatggctttgtatttccatattccttcataatccaaacatcc 783851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 792899 - 792955
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| |||||| ||||||| || |  || ||||||||||||||||||||||||||    
T  792899 agtgaataatttactccaagattcctctttaccatactccttcataatccaaacatc 792955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 2678394 - 2678450
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||| || ||||| |||||||| |  ||||||| |||||||||    
T  2678394 agtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatc 2678450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 3746060 - 3746012
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaa 172  Q
    ||||||||||||||||| ||||  ||| |||| ||||||||||||||||    
T  3746060 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 3746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 101 - 460
Target Start/End: Original strand, 1078136 - 1078489
Alignment:
Q  101 gatctaccctgcaagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatccttcataaccgaatcaaaatcact 200  Q
    ||||| ||||| |||||| | |||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||   | || || |    |||       
T  1078136 gatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcct---ttacagagtaggtatc--- 1078229  T
Q  201 atcaccataagtcacgcacaaacaatctctcaacacaaacaaggccaagaagttacacacatttannnnnnnagaatcaggaagcaataccttttgataa 300  Q
    ||||| | ||| || |||||| ||||| |||||||||  |||||| ||||||| |||||||| ||       | |||||||| |||| ||||||||||||    
T  1078230 atcacgagaagccaggcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctccataatcaggaggcaaaaccttttgataa 1078329  T
Q  301 gactctttctccaaatcaaaagaaataataaagcgtggacttctcccatcaaaatcaataacggccaaccaattaattgtgtcactcacaaatttacctg 400  Q
    || |||||  ||||||||||||||| ||||||||| ||||||   |  |  | |||||||  || |||||||||||| ||| |||||| |||||| || |    
T  1078330 gattcttttcccaaatcaaaagaaacaataaagcgaggactttctcgttggagatcaatagaggtcaaccaattaatcgtgccactcagaaattttccag 1078429  T
Q  401 attgctcaggaaggatactaccaaaagtaaactcctgaatgtttttccaacaattggtac 460  Q
    ||||  ||    ||| |  |||||||| |||||| |||||| |||||||| |||||||||    
T  1078430 attgtccaattgggacaacaccaaaaggaaactcttgaatgcttttccaagaattggtac 1078489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 3927112 - 3927063
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaa 172  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 24723267 - 24723212
Alignment:
Q  275 aatcaggaagcaataccttttgataagactctttctccaaatcaaaagaaataata 330  Q
    |||||||||| |||| || |||||||||||| ||||||||||||| ||||| ||||    
T  24723267 aatcaggaagaaatagctcttgataagactccttctccaaatcaagagaaacaata 24723212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 1421170 - 1421220
Alignment:
Q  126 caatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||| ||||||| ||||||||||| || |||||||||| |||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacatc 1421220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 7160752 - 7160805
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 6538888 - 6538844
Alignment:
Q  122 tgaacaatttagtccaagaatctttatttccatactccttcataa 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 7156190 - 7156243
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  7156190 gaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 7168688 - 7168738
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaac 173  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 7174371 - 7174424
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||| ||| |||||    
T  7174371 gaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 11237746 - 11237693
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||  ||| ||||||||||||||| ||||| |||||||||    
T  11237746 gaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 11237693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 33038211 - 33038160
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||| |||||||||| | ||| |||||||| ||||||||||||||||||||    
T  33038211 acaatctagtccaagactttttgtttccatattccttcataatccaaacatc 33038160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 33020364 - 33020314
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 175  Q
    ||||| |||||||||| | |||||||||||| |||||||||||||| ||||    
T  33020364 acaatctagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 7199976 - 7200029
Alignment:
Q  123 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||| ||| |||||||| || ||||||| |||||||||||| |||||||||    
T  7199976 gaacaatctagcccaagaattttcatttccaaactccttcataacccaaacatc 7200029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 33026708 - 33026656
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    ||||| |||||||||| | |||||||||||| | |||||||| ||||||||||    
T  33026708 acaatctagtccaagactttttatttccatattgcttcataacccaaacatcc 33026656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 34560917 - 34560969
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||||| | |||||||||||| || ||||||||  ||||||||    
T  34560917 acaatttagtccaagattttttatttccatattctttcataattgaaacatcc 34560969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 11081865 - 11081813
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 23766857 - 23766913
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  23766857 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 23816705 - 23816761
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  23816705 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatc 23816761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 23769641 - 23769697
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  23769641 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23769697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 23819489 - 23819545
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||    
T  23819489 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatc 23819545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 20293044 - 20292994
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatcc 20292994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 2067074 - 2067110
Alignment:
Q  147 atttccatactccttcataatccaaacatccttcata 183  Q
    |||||||||||||||||||||||||||||||||||||    
T  2067074 atttccatactccttcataatccaaacatccttcata 2067110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 1427824 - 1427878
Alignment:
Q  280 ggaagcaataccttttgataagactctttctccaaatcaaaagaaataataaagc 334  Q
    |||||||| ||||||||||||||||| ||| |||||||||||| || ||||||||    
T  1427824 ggaagcaaaaccttttgataagactccttccccaaatcaaaagcaacaataaagc 1427878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 20301492 - 20301442
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatcc 20301442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 20305905 - 20305855
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatcc 20305855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 20310309 - 20310259
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatcc 20310259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 11081955 - 11081910
Alignment:
Q  34 aacttcaacaacacttgatcatcctcaaataaatataccggcttgg 79  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||    
T  11081955 aacttcaacaacacttgatcatcctcaaatatatatactgccttgg 11081910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 23732223 - 23732167
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||| |||| |||||||  ||||||| ||||| ||||||||||||||||||||    
T  23732223 agtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatc 23732167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 1427689 - 1427744
Alignment:
Q  121 gtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||| |||| ||||||| ||| ||||||||||||| ||||||| |||||||||    
T  1427689 gtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatc 1427744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 2067212 - 2067265
Alignment:
Q  291 cttttgataagactctttctccaaatcaaaagaaataataaagcgtggacttct 344  Q
    ||||||||||||||||||| |||||||| | |||| |||||||| |||| ||||    
T  2067212 cttttgataagactctttccccaaatcatatgaaacaataaagcttggatttct 2067265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 23861021 - 23861077
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||||||  ||||  | ||||| |||||||| |||||||||||    
T  23861021 agtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 23861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 176393 - 176345
Alignment:
Q  117 aagagtgaacaatttagtccaagaatctttatttccatactccttcata 165  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||    
T  176393 aagagtgaacaatttagtccaagaatctttatttccataatcattcata 176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 370773 - 370833
Alignment:
Q  113 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaac 173  Q
    |||||| | |||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  370773 aagaaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 1442103 - 1442149
Alignment:
Q  120 agtgaacaatttagtccaagaatctttatttccatactccttcataa 166  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  1442103 agtgaacaatttagtccaagaatctttaattccataatccttcataa 1442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 175  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 7564748 - 7564798
Alignment:
Q  122 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaa 172  Q
    |||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  7564748 tgaacaatttagtccaagaatccttgtttccataatccttcataacccaaa 7564798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 1470922 - 1470975
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||| ||||||||||||||||||||| || ||||||| ||||| ||||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatcc 1470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    |||||||||||||| ||| |||||||||| |||||||||| ||||| ||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 174  Q
    ||||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaaca 174  Q
    ||||||||||||||||| |||| ||||||||| |||||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 1459540 - 1459593
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 177  Q
    ||||||||||||||||| |||||||||||| | || ||||||| ||||| ||||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatcc 1459593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaa 172  Q
    |||||||||||| ||||| |||||||||| |||||||||| |||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 4183000 - 4183052
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  4183000 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 4183052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 4743844 - 4743896
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  4743844 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 4743896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 17368418 - 17368366
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||||||||||||||  ||| |||||||||||| ||||| | |||||||||    
T  17368418 aacaatttagtccaagacccttcatttccatactctttcatcagccaaacatc 17368366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 20016174 - 20016232
Alignment:
Q  114 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaa 172  Q
    ||||||||||||||||||||||||||| |||| | ||||||| |||||||| |||||||    
T  20016174 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 20019761 - 20019823
Alignment:
Q  114 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||||||||||||| |||| | ||||||| |||||||| | |||||||||    
T  20019761 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 20019823  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 22672115 - 22672175
Alignment:
Q  113 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaac 173  Q
    |||||| ||||||||||||||||||||| || ||||||||||| |||||||| | ||||||    
T  22672115 aagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 55419834 - 55419792
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataa 166  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataa 55419792  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 20019896 - 20019962
Alignment:
Q  276 atcaggaagcaataccttttgataagactctttctccaaatcaaaagaaataataaagcgtggactt 342  Q
    ||||||| |||| |||||| || || | |||||||||||||||||||||| ||||||| ||| ||||    
T  20019896 atcaggaggcaaaacctttcgacaaaattctttctccaaatcaaaagaaacaataaagagtgcactt 20019962  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 89194 - 89147
Alignment:
Q  125 acaatttagtccaagaatctttatttccatactccttcataatccaaa 172  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaa 89147  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 32330 - 32380
Alignment:
Q  126 caatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||| ||||||| |||||||||||||| |||||||||| |||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatc 32380  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 51381452 - 51381502
Alignment:
Q  122 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaa 172  Q
    ||||||||||||||||||| |||| ||||||||| || |||||||||||||    
T  51381452 tgaacaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 51858658 - 51858606
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||| |||  ||||||||| |||||||| |||||||||||    
T  51858658 aacaatttagtccaagattctacatttccatattccttcatgatccaaacatc 51858606  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 23896147 - 23896188
Alignment:
Q  135 ccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| |||||||||||||| |||||||||| |||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatc 23896188  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| ||||||| ||||||||||| || |||||||||| |||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 51782848 - 51782799
Alignment:
Q  127 aatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    |||||| ||||||| | || ||||||||| ||||||||||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatc 51782799  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 51756749 - 51756801
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||| | |  ||||||||| |||||||| |||||||||||    
T  51756749 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatc 51756801  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 51854999 - 51854947
Alignment:
Q  124 aacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 176  Q
    ||||||||||||||||| |||  ||||||||| || ||||| |||||||||||    
T  51854999 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatc 51854947  T

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