View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12242_high_11 (Length: 241)
Name: NF12242_high_11
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12242_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 41069140 - 41068923
Alignment:
| Q |
19 |
agtggcacactgacactactgtacttgtttaatgccttggttatgttctacctctgcttgccaatagctagtaataattttttgttctaaaagaaagtac |
118 |
Q |
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| T |
41069140 |
agtggcacactgacactactgtacttgtttactgccttggttatgttctacctctgcttgccaatagctagtaataattttttgttctaaaagaaagtac |
41069041 |
T |
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| Q |
119 |
ccacgtccctatgaaaatagcttcaaaatctaaagttgggccctattttgagaaatacttacagtctatctcaccgaataatcaatatgaagctctaaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41069040 |
ccacgtccctatgaaaatagcttcaaaatctaaagttgggccctattttgagaaatacttacagtctatctcaccgaataatcaatatgaagctctaaac |
41068941 |
T |
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| Q |
219 |
accgtcattctctgcttc |
236 |
Q |
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||||| |||||| ||||| |
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| T |
41068940 |
accgttattctcggcttc |
41068923 |
T |
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