View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12242_high_3 (Length: 510)

Name: NF12242_high_3
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12242_high_3
NF12242_high_3
[»] chr1 (20 HSPs)
chr1 (266-492)||(15590553-15590779)
chr1 (117-264)||(15590370-15590515)
chr1 (58-120)||(3582846-3582908)
chr1 (58-124)||(30335632-30335698)
chr1 (11-56)||(15590093-15590138)
chr1 (58-118)||(5827673-5827733)
chr1 (120-182)||(15611903-15611965)
chr1 (77-118)||(43177766-43177807)
chr1 (392-436)||(15994668-15994712)
chr1 (57-120)||(23625241-23625304)
chr1 (78-120)||(51244007-51244049)
chr1 (120-185)||(15602457-15602522)
chr1 (78-118)||(8779657-8779697)
chr1 (78-118)||(14395915-14395955)
chr1 (78-118)||(35615399-35615439)
chr1 (405-440)||(15616831-15616866)
chr1 (78-120)||(14884761-14884803)
chr1 (78-120)||(23740230-23740272)
chr1 (60-116)||(6704111-6704167)
chr1 (68-120)||(44573797-44573849)
[»] chr2 (7 HSPs)
chr2 (58-122)||(11511839-11511903)
chr2 (58-118)||(20683482-20683542)
chr2 (58-118)||(43302431-43302491)
chr2 (77-117)||(32414680-32414720)
chr2 (72-121)||(39446008-39446057)
chr2 (58-118)||(7772716-7772776)
chr2 (58-90)||(45154449-45154481)
[»] chr3 (12 HSPs)
chr3 (58-121)||(38138147-38138210)
chr3 (77-118)||(50346083-50346124)
chr3 (57-120)||(31153317-31153380)
chr3 (58-118)||(51309645-51309705)
chr3 (78-116)||(4489617-4489655)
chr3 (58-120)||(24744340-24744402)
chr3 (77-118)||(21084658-21084699)
chr3 (62-123)||(25926321-25926382)
chr3 (78-115)||(47968201-47968238)
chr3 (58-118)||(3433032-3433092)
chr3 (459-491)||(8524261-8524293)
chr3 (78-118)||(14464951-14464991)
[»] chr8 (10 HSPs)
chr8 (60-120)||(18807126-18807186)
chr8 (58-120)||(14728839-14728901)
chr8 (58-120)||(29416749-29416811)
chr8 (58-118)||(10288172-10288232)
chr8 (72-118)||(41123424-41123470)
chr8 (77-117)||(26705698-26705738)
chr8 (78-118)||(30905482-30905522)
chr8 (58-120)||(13628958-13629020)
chr8 (58-120)||(13729370-13729432)
chr8 (68-110)||(32953307-32953349)
[»] chr6 (8 HSPs)
chr6 (69-121)||(33099517-33099569)
chr6 (386-428)||(29893741-29893783)
chr6 (385-434)||(29908778-29908827)
chr6 (385-434)||(29928460-29928509)
chr6 (385-434)||(30119095-30119144)
chr6 (69-117)||(4405613-4405661)
chr6 (385-425)||(29115448-29115488)
chr6 (58-118)||(32658349-32658409)
[»] chr5 (11 HSPs)
chr5 (58-118)||(8433671-8433731)
chr5 (457-492)||(42124801-42124836)
chr5 (58-118)||(13417182-13417242)
chr5 (58-118)||(25768296-25768356)
chr5 (72-120)||(33494647-33494695)
chr5 (57-109)||(40976540-40976592)
chr5 (58-121)||(32534955-32535018)
chr5 (58-120)||(8680459-8680520)
chr5 (58-120)||(37194389-37194451)
chr5 (69-118)||(4277321-4277370)
chr5 (58-118)||(10933618-10933678)
[»] chr7 (9 HSPs)
chr7 (58-112)||(37504019-37504073)
chr7 (58-120)||(22074402-22074464)
chr7 (58-120)||(33882191-33882253)
chr7 (72-120)||(41003290-41003338)
chr7 (77-120)||(957930-957973)
chr7 (78-115)||(10248962-10248999)
chr7 (77-118)||(42710410-42710451)
chr7 (388-432)||(3642227-3642271)
chr7 (72-120)||(17603737-17603785)
[»] chr4 (9 HSPs)
chr4 (68-118)||(36219226-36219276)
chr4 (68-120)||(26417339-26417391)
chr4 (58-120)||(6076606-6076668)
chr4 (58-118)||(22424940-22425000)
chr4 (77-120)||(6077826-6077869)
chr4 (78-120)||(45064334-45064376)
chr4 (58-118)||(30599885-30599945)
chr4 (58-118)||(2129068-2129128)
chr4 (78-114)||(51676977-51677013)
[»] scaffold0110 (1 HSPs)
scaffold0110 (58-118)||(26672-26732)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 266 - 492
Target Start/End: Original strand, 15590553 - 15590779
Alignment:
Q  266 cattcaccaattcacacaattctcatattaggccattcatttctactatgaccattgtcatcaattttgcctttcctctattcttcaagatccttaagat 365  Q
    ||||| |||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15590553 cattctccaattcacacagttctgataataggccagtcatttctactatgaccattgtcatcagttttgcctttcctctattcttcaagatccttaagat 15590652  T
Q  366 gtggggttatcatcctcttgataccataaccttcactacacttttcaaaggtctttgtcttaacggtgatatttataaaacacttcacttaaaagtgatg 465  Q
    | ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15590653 ggggggttatcatcctcctgatgccataaccttcactacacttttcaaaggtctttgtcttaacggtgatatttataaaacacttcacttaaaagtgatg 15590752  T
Q  466 ttggcagctcaccttcaattttgttac 492  Q
    |||||||||||||||||||||||||||    
T  15590753 ttggcagctcaccttcaattttgttac 15590779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 117 - 264
Target Start/End: Original strand, 15590370 - 15590515
Alignment:
Q  117 ctaaccaatgatattatgccacacaatagcaatgacaatatgtaccaacgtggcattcatatattggtagtaatcagccacctcatgtccacgtaagaca 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15590370 ctaaccaatgatagtatgccacacaatagcaatgacaatatgtaccaacgtggcattcatatattggtagtaatcagccacctcatgtccacgtaagaca 15590469  T
Q  217 taagcatgtgtgaatttcccttaagctgagtcaagttaagaagaagta 264  Q
    ||||||    ||||||||||||||||||||||||||||||||||||||    
T  15590470 taagca--catgaatttcccttaagctgagtcaagttaagaagaagta 15590515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 3582846 - 3582908
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  3582846 atgtgtccatgtgggacatgtttaagaccttaaatatgagggtctccattgtggatgctctaa 3582908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 30335698 - 30335632
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaaccaa 124  Q
    ||||||| | |||| |||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  30335698 atgtgtcaatgtgaaacctgtttaagacctcaaagttgagggtctccattgtggatgctcttaccaa 30335632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 15590093 - 15590138
Alignment:
Q  11 cacagactcacaatcacaactggtggatttataatgattttcctta 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  15590093 cacagactcacaatcacaactagtggatttataatgattttcctta 15590138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 5827673 - 5827733
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| |||||||| |||||| ||||||||| |||| ||||||||||||||||||||    
T  5827673 atgtgtccatgtgagacccgtttaaaacctcaaatgtgagagtctccattgtggatgctct 5827733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 15611903 - 15611965
Alignment:
Q  120 accaatgatattatgccacacaatagcaatgacaatatgtaccaacgtggcattcatatattg 182  Q
    |||||| ||| |||||||||||||| |||||||||| | ||||||||||||||||||| ||||    
T  15611903 accaataataatatgccacacaataccaatgacaatctctaccaacgtggcattcatacattg 15611965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 43177807 - 43177766
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  43177807 gtttaagacctcaaatgtgagggtctccattgtggatgctct 43177766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 15994712 - 15994668
Alignment:
Q  392 taaccttcactacacttttcaaaggtctttgtcttaacggtgata 436  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15994712 taaccttcaatacacttttgaaaggtctttgtcttaacggtgata 15994668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 23625241 - 23625304
Alignment:
Q  57 tatgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||| | ||| ||||  |||||||||||||| ||||| ||||||||||||||||||||||    
T  23625241 tatgtgtcaatgtgggacccatttaagacctcaaagatgagagtctccattgtggatgctctaa 23625304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 51244049 - 51244007
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  51244049 tttaagacctcaaatatgagagtctccattgtgaatgctctaa 51244007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 15602457 - 15602522
Alignment:
Q  120 accaatgatattatgccacacaatagcaatgacaatatgtaccaacgtggcattcatatattggta 185  Q
    |||||| ||| || |||||||||  |||||||||| |||| || ||||||||||||||||||||||    
T  15602457 accaattatagtacgccacacaactgcaatgacaagatgttccgacgtggcattcatatattggta 15602522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 8779697 - 8779657
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  8779697 tttaagatctcaaatatgagagtctccattgtggatgctct 8779657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 14395955 - 14395915
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  14395955 tttaagacctcaaagatgagagtctccattgtggatgctct 14395915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 35615439 - 35615399
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  35615439 tttaagacctcaaagttgagggtctccattgtggatgctct 35615399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 15616831 - 15616866
Alignment:
Q  405 acttttcaaaggtctttgtcttaacggtgatattta 440  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15616831 acttttctaaggtctttgtcttaacggtgatattta 15616866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 14884761 - 14884803
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||    
T  14884761 tttaagacctcaaagatgagagtctccattgtagatgctctaa 14884803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 23740230 - 23740272
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||||||||| ||||| |||||||||||||| |||||||    
T  23740230 tttaagacctcaaagatgagagtctccattgtggaagctctaa 23740272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 6704167 - 6704111
Alignment:
Q  60 gtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgct 116  Q
    ||||||| ||||||||  ||||||| ||||||  ||||||||||||||||| |||||    
T  6704167 gtgtccatgtgagacccatttaagatctcaaaattgagggtctccattgtgaatgct 6704111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 44573849 - 44573797
Alignment:
Q  68 gtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||||  |||||||||||||| ||||| ||| | ||||||||||||||||    
T  44573849 gtgagacccatttaagacctcaaagatgagagtcactattgtggatgctctaa 44573797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 11511903 - 11511839
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaacc 122  Q
    ||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  11511903 atgtgtccatgtgggacccgtttaagacctcaaatatgagtgtctccattgtggatgctctaacc 11511839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 20683482 - 20683542
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  20683482 atgtgtccatgtgagacctatttaagacctcaaatgtgagggtctctattgtggatgctct 20683542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 43302431 - 43302491
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||| | ||| ||||||||||||||||||||  |||||||||| ||||||||||||||    
T  43302431 atgtgtcaatgtgggacctgtttaagacctcaaaattgagggtctctattgtggatgctct 43302491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 32414680 - 32414720
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctc 117  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32414680 gtttaagacctcaaatttgaggatctccattgtggatgctc 32414720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 39446008 - 39446057
Alignment:
Q  72 gacctgtttaagacctcaaatatgagggtctccattgtggatgctctaac 121  Q
    |||| ||||||||||||||   ||||||||||||||||||||| ||||||    
T  39446008 gacccgtttaagacctcaagattgagggtctccattgtggatgttctaac 39446057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 7772776 - 7772716
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| |||||| | ||||||||||| |||  ||| ||||||||||||||| |||||    
T  7772776 atgtgtccatgtgagatccgtttaagaccttaaaattgaaggtctccattgtggaggctct 7772716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 45154449 - 45154481
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaa 90  Q
    ||||||||| |||||||||||||||||||||||    
T  45154449 atgtgtccatgtgagacctgtttaagacctcaa 45154481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 38138210 - 38138147
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaac 121  Q
    |||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  38138210 atgtgtccatatgagacccgtttaagacctcaaatgtgagggtctccattgtggatgctctaac 38138147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 50346083 - 50346124
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  50346083 gtttaagacctcaaatgtgagggtctccattgtggatgctct 50346124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 31153380 - 31153317
Alignment:
Q  57 tatgtgtccacgtgagacctgtttaagacct-caaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||| || ||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  31153380 tatgtgtacaggtgggacccgtttaagaccttcaaat-tgagggtctccattgtggatgctctaa 31153317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 51309645 - 51309705
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||| || |||||| |||||||||||||  ||| |||||||||| ||||||||||||||    
T  51309645 atgtgtacaagtgagatctgtttaagaccttcaatttgagggtctcaattgtggatgctct 51309705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 4489617 - 4489655
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgct 116  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  4489617 tttaagacctcaaagatgagagtctccattgtggatgct 4489655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 24744402 - 24744340
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||| |||||||||||| ||||||| ||| ||  | ||| |||||||||||||||||||||    
T  24744402 atgtgtacacgtgagacctatttaagaactccaaattcaggatctccattgtggatgctctaa 24744340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 21084658 - 21084699
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||||||||||||| |||| ||||||||||||||| ||||    
T  21084658 gtttaagacctcaaatgtgagagtctccattgtggatactct 21084699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 25926382 - 25926321
Alignment:
Q  62 gtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaacca 123  Q
    ||||| ||| |||| |||||||||||||||| |||||||||| |||||  ||||||| ||||    
T  25926382 gtccatgtgggacccgtttaagacctcaaatgtgagggtctcgattgtaaatgctcttacca 25926321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 47968201 - 47968238
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgc 115  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  47968201 tttaagacctcaaagttgagggtctccattgtggatgc 47968238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 3433032 - 3433092
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||| || |||||||| | |||||||||  ||| ||||| |||||||||||||||||||    
T  3433032 atgtgtacaagtgagacccgcttaagaccttcaatttgaggatctccattgtggatgctct 3433092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 491
Target Start/End: Original strand, 8524261 - 8524293
Alignment:
Q  459 agtgatgttggcagctcaccttcaattttgtta 491  Q
    ||||||||||| |||||||||||||||||||||    
T  8524261 agtgatgttggaagctcaccttcaattttgtta 8524293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 14464991 - 14464951
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||||||||||| ||||| |||||||| |||||||||||    
T  14464991 tttaagacctcaaagatgagagtctccatcgtggatgctct 14464951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 18807126 - 18807186
Alignment:
Q  60 gtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  18807126 gtgtccatgtgagacccgtttaaaacctcaaatgtgagggtctccattgtggatgctctaa 18807186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 14728901 - 14728839
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||||| ||||||||  ||||||||||||||  |||||||||||||||||||||||||||    
T  14728901 atgtgtccatgtgagacccatttaagacctcaaagttgagggtctccattgtggatgctctaa 14728839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 29416749 - 29416811
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||| | || ||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  29416749 atgtgtctatgtaagacccgtttaagacctcaaatgtgagggtttccattgtggatgctctaa 29416811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 10288172 - 10288232
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||  ||||| ||||||||    
T  10288172 atgtgtccatgtgagacccgtttaagacctcaaatgtgagggtctttattgtagatgctct 10288232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 41123424 - 41123470
Alignment:
Q  72 gacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  41123424 gacctgtttaagacctcaaatgtgatggtctccattgtgaatgctct 41123470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 26705738 - 26705698
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctc 117  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  26705738 gtttaagacctcaaatgtgagggtctccattgttgatgctc 26705698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 30905522 - 30905482
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  30905522 tttaagacctcaaatttgagggtttccattgtggatgctct 30905482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 13629020 - 13628958
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||| || ||||||||  ||||||| |||||| |||  |||||||||||||||||||||||    
T  13629020 atgtgtacatgtgagacccatttaagaactcaaaaatggaggtctccattgtggatgctctaa 13628958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 13729432 - 13729370
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||| || ||||||||  ||||||| |||||| |||  |||||||||||||||||||||||    
T  13729432 atgtgtacatgtgagacccatttaagaactcaaaaatggaggtctccattgtggatgctctaa 13729370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 32953307 - 32953349
Alignment:
Q  68 gtgagacctgtttaagacctcaaatatgagggtctccattgtg 110  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||    
T  32953307 gtgagacttgtttaagacctcaaatataagggtcttcattgtg 32953349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 33099569 - 33099517
Alignment:
Q  69 tgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaac 121  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  33099569 tgagacccgtttaagacctcaaaattgagggtctccattgtggatgctctaac 33099517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 29893741 - 29893783
Alignment:
Q  386 ataccataaccttcactacacttttcaaaggtctttgtcttaa 428  Q
    ||||||||||||||||||||||  |||| ||||||||||||||    
T  29893741 ataccataaccttcactacactcatcaagggtctttgtcttaa 29893783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 29908778 - 29908827
Alignment:
Q  385 gataccataaccttcactacacttttcaaaggtctttgtcttaacggtga 434  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||    
T  29908778 gataccataaccttcactacactcatcaagggtctttgtctcaaaggtga 29908827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 29928460 - 29928509
Alignment:
Q  385 gataccataaccttcactacacttttcaaaggtctttgtcttaacggtga 434  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||    
T  29928460 gataccataaccttcactacactcatcaagggtctttgtctcaaaggtga 29928509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 30119144 - 30119095
Alignment:
Q  385 gataccataaccttcactacacttttcaaaggtctttgtcttaacggtga 434  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||    
T  30119144 gataccataaccttcactacactcatcaagggtctttgtctcaaaggtga 30119095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 4405661 - 4405613
Alignment:
Q  69 tgagacctgtttaagacctcaaatatgagggtctccattgtggatgctc 117  Q
    ||||||| ||||||||||||||||   |||||||| |||||||||||||    
T  4405661 tgagacccgtttaagacctcaaatgcaagggtctctattgtggatgctc 4405613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 29115448 - 29115488
Alignment:
Q  385 gataccataaccttcactacacttttcaaaggtctttgtct 425  Q
    |||||||||||||||||||||||  |||| |||||||||||    
T  29115448 gataccataaccttcactacactcatcaagggtctttgtct 29115488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 32658409 - 32658349
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||||||||||||  ||||||| |  ||| ||||| ||||||| ||||||||||||    
T  32658409 atgtgtccacgtgagacccatttaagaacctaaaaatgagtgtctccactgtggatgctct 32658349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 8433731 - 8433671
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| ||| ||||| ||||||||||||||  |||||||||||||||||||||||||    
T  8433731 atgtgtccatgtgggacctatttaagacctcaaagttgagggtctccattgtggatgctct 8433671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 492
Target Start/End: Original strand, 42124801 - 42124836
Alignment:
Q  457 aaagtgatgttggcagctcaccttcaattttgttac 492  Q
    ||||||||||||||||||||||||||||||||||||    
T  42124801 aaagtgatgttggcagctcaccttcaattttgttac 42124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 13417242 - 13417182
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| |||  ||| |||||||||||||||| ||||| |||||||||| ||||||||    
T  13417242 atgtgtccatgtggaacccgtttaagacctcaaatgtgaggatctccattgtagatgctct 13417182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 25768296 - 25768356
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||| | ||| |||| |||||||||||||||| ||||| ||||||| |||||||||||    
T  25768296 atgtgtctatgtgggacccgtttaagacctcaaatgtgaggatctccatcgtggatgctct 25768356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 33494695 - 33494647
Alignment:
Q  72 gacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||||||||| ||||   |||||||||||||||||||||||||||    
T  33494695 gacctgtttaagacttcaagattgagggtctccattgtggatgctctaa 33494647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 40976540 - 40976592
Alignment:
Q  57 tatgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgt 109  Q
    |||||||||| |||  |||  ||||||||||||||||||||||||||||||||    
T  40976540 tatgtgtccatgtggaacccatttaagacctcaaatatgagggtctccattgt 40976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 32534955 - 32535018
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaac 121  Q
    ||||||| | ||||||||  || ||||||||||| |||||  ||||||||||||||||||||||    
T  32534955 atgtgtcaatgtgagaccaattcaagacctcaaagatgagactctccattgtggatgctctaac 32535018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 8680520 - 8680459
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||||| |||||||| |||||||||||||||| | |  ||||||| ||||||||||||||    
T  8680520 atgtgtccatgtgagacccgtttaagacctcaaatgtaattgtctcca-tgtggatgctctaa 8680459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 37194389 - 37194451
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||| | ||||||||  ||||| |||||||| |||||  |||||||||||||||||||||    
T  37194389 atgtgtcaatgtgagacccatttaaaacctcaaagatgagaatctccattgtggatgctctaa 37194451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 4277370 - 4277321
Alignment:
Q  69 tgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||||  |||||||||||||| ||||| ||||||||||| ||||||||    
T  4277370 tgagacccatttaagacctcaaagatgagagtctccattgtagatgctct 4277321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 10933618 - 10933678
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| |||| ||| |||||||||||||||| |||| || | |||| ||||||||||    
T  10933618 atgtgtccatgtgatacccgtttaagacctcaaatgtgagagtgttcattatggatgctct 10933678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 37504019 - 37504073
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtgga 112  Q
    ||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||    
T  37504019 atgtgtccacgtgggacccgtttaagacttcaaatgtgagggtctccattgtgga 37504073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 22074402 - 22074464
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||||| |||||||| |||||||||||||||   |||| ||||||||||| |||||||||    
T  22074402 atgtgtccatgtgagacccgtttaagacctcaaaatagaggttctccattgtgaatgctctaa 22074464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 33882191 - 33882253
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||||| ||| || | |||||||||||||||| ||||||| |||||| ||||||||||||    
T  33882191 atgtgtccatgtgggatccgtttaagacctcaaatgtgagggtttccattatggatgctctaa 33882253  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 41003338 - 41003290
Alignment:
Q  72 gacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||| |||||||| ||||||||||| |||||||||||||||| |||||    
T  41003338 gacctatttaagacttcaaatatgagagtctccattgtggatgttctaa 41003290  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 957973 - 957930
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||    
T  957973 gtttaagatctcaaatgtgagggtctccattatggatgctctaa 957930  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 10248999 - 10248962
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgc 115  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  10248999 tttaagacctcaaagttgagggtctccattgtggatgc 10248962  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 42710451 - 42710410
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  42710451 gtttaagacctcaagattgagggtctccattgtggatgctct 42710410  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 3642227 - 3642271
Alignment:
Q  388 accataaccttcactacacttttcaaaggtctttgtcttaacggt 432  Q
    ||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  3642227 accataaccttcaatacacttatcaatggtatttgtcttaacggt 3642271  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 17603785 - 17603737
Alignment:
Q  72 gacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||| |||||| | ||||||  |||||||||||||||||||||||||||    
T  17603785 gacccgtttaatatctcaaaattgagggtctccattgtggatgctctaa 17603737  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 36219226 - 36219276
Alignment:
Q  68 gtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  36219226 gtgagacccgtttaagacctcaaatgtgagggtctccattgtagatgctct 36219276  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 26417339 - 26417391
Alignment:
Q  68 gtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||| ||||| ||| |||||||||||| |||||||||||||||||||||    
T  26417339 gtgagacccgtttatgacatcaaatatgaggatctccattgtggatgctctaa 26417391  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 6076668 - 6076606
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||| || ||| |||| |||||||||||  ||| |||||||||||||||||||||||||||    
T  6076668 atgtgtacaagtgggacccgtttaagaccttcaatttgagggtctccattgtggatgctctaa 6076606  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 22425000 - 22424940
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||||| |||  |||| ||||||||||||||  ||| |||||||||||||||||||||    
T  22425000 atgtgtccatgtggaacctatttaagacctcaaagttgaaggtctccattgtggatgctct 22424940  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 6077869 - 6077826
Alignment:
Q  77 gtttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    ||||||||||||||   |||||||||||||||||||||||||||    
T  6077869 gtttaagacctcaagattgagggtctccattgtggatgctctaa 6077826  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 45064334 - 45064376
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatgctctaa 120  Q
    |||||||||||||| ||| | ||||||||||||||||||||||    
T  45064334 tttaagacctcaaagatgtgagtctccattgtggatgctctaa 45064376  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 30599885 - 30599945
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacc-tcaaatatgagggtctccattgtggatgctct 118  Q
    |||||| || |||||||  |||||||||| |||||| |||||||||||||||||||||||||    
T  30599885 atgtgtacaagtgagactcgtttaagaccttcaaat-tgagggtctccattgtggatgctct 30599945  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 2129068 - 2129128
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||| | ||| ||||| |||||||||||||| ||||| |||| |||||| ||||||||    
T  2129068 atgtgtcaatgtgggacctctttaagacctcaaagatgagagtcttcattgtagatgctct 2129128  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 51676977 - 51677013
Alignment:
Q  78 tttaagacctcaaatatgagggtctccattgtggatg 114  Q
    ||||||||||||||  |||||||||||||||||||||    
T  51676977 tttaagacctcaaagttgagggtctccattgtggatg 51677013  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 26732 - 26672
Alignment:
Q  58 atgtgtccacgtgagacctgtttaagacctcaaatatgagggtctccattgtggatgctct 118  Q
    ||||||| | |||||| || |||||| ||||||| ||||| ||||||||||| ||||||||    
T  26732 atgtgtcaatgtgagatctatttaaggcctcaaagatgagagtctccattgtagatgctct 26672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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