View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12242_high_4 (Length: 468)
Name: NF12242_high_4
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12242_high_4 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: scaffold0102 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 5 - 448
Target Start/End: Original strand, 31720 - 32163
Alignment:
| Q |
5 |
gaggagcacagattttaaataaagcaagagccgaaattgttgattttaccagcaatgcagatgtaactaatgaacctggtcactacgttatctactggga |
104 |
Q |
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| T |
31720 |
gaggatcacagattttaaataaagcaagagccgaaattgttgattttaccagcaatgcagatgtaactaatgaacctggtcactacgttatttactggga |
31819 |
T |
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| Q |
105 |
gattaaaggagaggtagatgacaatgtacttgatgattgttgcagagaaatggacctatcttttgctgatcatggatatgtagtgtcaagaaaaacaaat |
204 |
Q |
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| T |
31820 |
gattaaaggagaggtagatgacaatgtacttgatgattgttgcagagaaatggacctatcttttgctgatcatggatatgtagtgtcaagaaaaacaaat |
31919 |
T |
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| Q |
205 |
tcaattgggccacttgaactttgcattttggagagagggactttcaagaagattttggataatttcatagccaatggggttgcattgaaccaatttaaga |
304 |
Q |
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| T |
31920 |
tcaattgggccacttgaactttgcattttggagagagggactttcaagaagattttggataatttcatagccaatggggttgcattgaaccaatttaaga |
32019 |
T |
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| Q |
305 |
ctcctaggtgcactaacaatcatgtgttactcaaaattcttgacacttataccataaaaaggtttcgtagcacaggttatagtttaaattagaagcacac |
404 |
Q |
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| T |
32020 |
ctcctaggtgcactaacaatcatgtgttactcaaaattcttgaaacttataccataaaaaggtttcgtagcacaggatatagtttaaattagaagcacac |
32119 |
T |
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| Q |
405 |
tattatggatgtagttggtaatatttccttaatttaatggattt |
448 |
Q |
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| T |
32120 |
tattatggatgtagttggtaatatttccttaatttaatggattt |
32163 |
T |
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