View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12242_high_5 (Length: 414)

Name: NF12242_high_5
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12242_high_5
NF12242_high_5
[»] chr1 (2 HSPs)
chr1 (99-404)||(26415420-26415728)
chr1 (19-131)||(52891030-52891142)
[»] chr8 (10 HSPs)
chr8 (19-131)||(2404246-2404358)
chr8 (19-131)||(4746406-4746518)
chr8 (19-131)||(4751431-4751543)
chr8 (19-131)||(2409485-2409597)
chr8 (19-131)||(18347052-18347164)
chr8 (19-131)||(18343009-18343121)
chr8 (41-131)||(36962887-36962977)
chr8 (74-131)||(36959123-36959180)
chr8 (19-70)||(15695220-15695271)
chr8 (19-56)||(36959083-36959121)
[»] chr4 (3 HSPs)
chr4 (19-131)||(39544888-39545000)
chr4 (19-130)||(9406151-9406262)
chr4 (19-105)||(39571395-39571481)
[»] chr2 (7 HSPs)
chr2 (19-131)||(901482-901594)
chr2 (19-131)||(29884865-29884977)
chr2 (19-131)||(29889870-29889982)
chr2 (296-399)||(27985213-27985316)
chr2 (296-399)||(28071743-28071846)
chr2 (133-194)||(27985377-27985438)
chr2 (133-194)||(28071907-28071968)
[»] chr7 (2 HSPs)
chr7 (19-131)||(34042133-34042245)
chr7 (19-131)||(34047139-34047251)
[»] chr3 (2 HSPs)
chr3 (19-131)||(34531206-34531318)
chr3 (29-131)||(36394223-36394325)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 99 - 404
Target Start/End: Original strand, 26415420 - 26415728
Alignment:
Q  99 ataatgacaaataatatcatttgacttttctacggtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaa---a 195  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  26415420 ataatgacaaataatatcatttgacttttctacagtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaataaa 26415519  T
Q  196 gtaactgaaatttataactgctacttgtttatatactgaagccagcattccatgtgattagtacaaaataaaaggatccactttcaaccaaactttagtt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26415520 gtaactgaaatttataactgctacttgtttatatactgaagccagcattccatgtgattagtacaaaataaaaggatccactttcaaccaaactttagtt 26415619  T
Q  296 acattctgaaaatttacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctatggagaaacagcatctgaa 395  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26415620 acattctgaaaatatacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctgtggagaaacagcatctgaa 26415719  T
Q  396 gcacaggtt 404  Q
    |||| ||||    
T  26415720 gcaccggtt 26415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 52891142 - 52891030
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52891142 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 52891043  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  52891042 ttgacttttctac 52891030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 2404246 - 2404358
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2404246 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 2404345  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  2404346 ttgacttttctac 2404358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 4746406 - 4746518
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4746406 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 4746505  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  4746506 ttgacttttctac 4746518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 4751431 - 4751543
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4751431 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 4751530  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  4751531 ttgacttttctac 4751543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 2409485 - 2409597
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  2409485 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgaataataatggcataatatattctaataatgaccaataatatcat 2409584  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  2409585 ttgacttttctac 2409597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 18347052 - 18347164
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  18347052 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaatgatggcataatatattctaataatgaccaataatatcat 18347151  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  18347152 ttgacttttctac 18347164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 18343009 - 18343121
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  18343009 tttatatataaaaaggaattacaataaacataatgataaataatgtcttatcataactaataatggcataatatattctaataatgaccaataatatcat 18343108  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  18343109 ttgacttttctac 18343121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 36962887 - 36962977
Alignment:
Q  41 aataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 131  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36962887 aataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 36962977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 36959123 - 36959180
Alignment:
Q  74 actaataatggcataatatattctaataatgacaaataatatcatttgacttttctac 131  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36959123 actaataatggcataatatattctaataatgaccaataatatcatttgacttttctac 36959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 15695271 - 15695220
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatc 70  Q
    |||||||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  15695271 tttatatagaaaaaggaattacagtaaacataatgacaaataatttcttatc 15695220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 36959083 - 36959121
Alignment:
Q  19 tttatatat-aaaaaggaattacaataaacataatgaca 56  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  36959083 tttatatattaaaaaggaattacaataaacataatgaca 36959121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 39545000 - 39544888
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39545000 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 39544901  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  39544900 ttgacttttctac 39544888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 9406151 - 9406262
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  9406151 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgacaaataatggcataatatattcaaataatgaccaataatatcat 9406250  T
Q  119 ttgacttttcta 130  Q
    ||||||||||||    
T  9406251 ttgacttttcta 9406262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 39571481 - 39571395
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatga 105  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39571481 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatga 39571395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 901594 - 901482
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  901594 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 901495  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  901494 ttgacttttctac 901482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 29884865 - 29884977
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29884865 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 29884964  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  29884965 ttgacttttctac 29884977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 29889870 - 29889982
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29889870 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccaataatatcat 29889969  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  29889970 ttgacttttctac 29889982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 27985316 - 27985213
Alignment:
Q  296 acattctgaaaatttacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctatggagaaacagcatctgaa 395  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||    
T  27985316 acattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaa 27985217  T
Q  396 gcac 399  Q
    ||||    
T  27985216 gcac 27985213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 28071846 - 28071743
Alignment:
Q  296 acattctgaaaatttacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctatggagaaacagcatctgaa 395  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||    
T  28071846 acattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaa 28071747  T
Q  396 gcac 399  Q
    ||||    
T  28071746 gcac 28071743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 27985438 - 27985377
Alignment:
Q  133 gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaa 194  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27985438 gtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaa 27985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 28071968 - 28071907
Alignment:
Q  133 gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaa 194  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28071968 gtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaa 28071907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 34042245 - 34042133
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  34042245 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccgataatatcat 34042146  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  34042145 ttgacttttctac 34042133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 34047251 - 34047139
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  34047251 tttatatataaaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatggcataatatattctaataatgaccgataatatcat 34047152  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  34047151 ttgacttttctac 34047139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 34531206 - 34531318
Alignment:
Q  19 tttatatataaaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcat 118  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  34531206 tttatataggaaaaggaattacaataaacataatgacaaataatgttttatcatgactaataatggcataatatattctaataacgaccaataatatcat 34531305  T
Q  119 ttgacttttctac 131  Q
    |||||||||||||    
T  34531306 ttgacttttctac 34531318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 36394325 - 36394223
Alignment:
Q  29 aaaaggaattacaataaacataatgacagataatgtcttatcatgactaataatggcataatatattctaataatgacaaataatatcatttgacttttc 128  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| | |||||||||    
T  36394325 aaaaggaattacaataaacataatgacaaataatgtcttatcatgactaataatgacataatatattctaataatgatcaataatatcctctgacttttc 36394226  T
Q  129 tac 131  Q
    |||    
T  36394225 tac 36394223  T

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