View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12242_high_7 (Length: 338)
Name: NF12242_high_7
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12242_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 6145536 - 6145855
Alignment:
| Q |
1 |
acactcaatgaagttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtca |
100 |
Q |
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| T |
6145536 |
acactcaatgtagttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtca |
6145635 |
T |
|
| Q |
101 |
catgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaaacttctcattgaatcgggaac |
200 |
Q |
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| T |
6145636 |
catgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaagcttctcattgaatcaggaac |
6145735 |
T |
|
| Q |
201 |
ttggtcatagaaatattcttgtaaaccaacgagcgccaaaccgtcgccaaaaccgataattagaaactgcggcgctaaccaaaaaacactcattgaaagt |
300 |
Q |
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| T |
6145736 |
ttgatcatagaaatattcttgtaaaccaacaagcgccaaaccgtcgccaaaaccgataattagaaactgcggcgctaaccaaaaaacactcattgaaagt |
6145835 |
T |
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| Q |
301 |
gaaccatgtgatggattcat |
320 |
Q |
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| T |
6145836 |
gaaccatgtgatggattcat |
6145855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 23692370 - 23692644
Alignment:
| Q |
12 |
agttatagctgccaatagccaatagaatttatccaaacgactactattcaaatcttcaccaaaccaacttttaccacttttacttgtcacatgatcaaca |
111 |
Q |
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| T |
23692370 |
agttatagctgccaatagccaataaaatttgtccaatctactactattcaaatccttaccaaaccaactcttcccatttttctttgttatatgatcaaca |
23692469 |
T |
|
| Q |
112 |
attgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaaacttctcattgaatcgggaacttggtcataga |
211 |
Q |
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| T |
23692470 |
attgttatcaacacactactaataaaatttgcagctccaatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaacttggtcataga |
23692569 |
T |
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| Q |
212 |
aatattcttgtaaaccaacgagcgccaaaccgtcgccaaaaccgataattagaaactgcggcgctaaccaaaaaa |
286 |
Q |
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| T |
23692570 |
aatattcttgtaatcccacaagggtaaatccatcaccaaaaccaataattagaaattgtggagccaaccaaaaaa |
23692644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 31074771 - 31074931
Alignment:
| Q |
70 |
ccaaaccaacttttaccacttttacttgtcacatgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtc |
169 |
Q |
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| T |
31074771 |
ccaatccaacttttaccattcttttctgtcacttgatccacaatagtgattaaaaaactacttaagaaacttccaactccaatcacactaagatataatg |
31074870 |
T |
|
| Q |
170 |
caattcccaaacttctcattgaatcgggaacttggtcatagaaatattcttgtaaaccaac |
230 |
Q |
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| T |
31074871 |
ccattcccaaactcttcattgagtcaggaacttggccatagaaatactcttgtaaaccaac |
31074931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 31063437 - 31063521
Alignment:
| Q |
146 |
ctccaatcacactaaggtaaagtccaattcccaaacttctcattgaatcgggaacttggtcatagaaatattcttgtaaaccaac |
230 |
Q |
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| T |
31063437 |
ctccaatcacactaagatataatgccattcctaagcttctcattgagtcaggaacttggtcgtagaaatactcttgtaaaccaac |
31063521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 31057383 - 31057439
Alignment:
| Q |
174 |
tcccaaacttctcattgaatcgggaacttggtcatagaaatattcttgtaaaccaac |
230 |
Q |
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|||||| |||||||||||||| ||||||| ||| |||||||| ||||||| |||||| |
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| T |
31057383 |
tcccaagcttctcattgaatcaggaacttcgtcgtagaaatactcttgtataccaac |
31057439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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