View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12242_high_8 (Length: 244)
Name: NF12242_high_8
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12242_high_8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 41359876 - 41359636
Alignment:
| Q |
3 |
cttcttactgttcatcattcataggttctaagacacacttgatatttttgaatggtataatactcctacactcctaaatatacacaaaaattcaaatgta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41359876 |
cttcttactgttcatcattcataggttctaagacacacttgatatttttgaatggtataatactcctacacttctaaatatacacaaaaattcaaatgta |
41359777 |
T |
|
| Q |
103 |
tttgttcgaaannnnnnnnnnnnatttatatttcagatcaaagagaatacatctgattgaaaatgattctctagactaacttgtgttggtcagaaagttc |
202 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41359776 |
tttgttcgaaatttgacttttt-atttatatttcagatcaaagagaatacatctcatggaaaatgattctctagactaacttgtgttggtcggaaagttc |
41359678 |
T |
|
| Q |
203 |
gagaagtttaaccaaaaagtataccaccatcagaaatcaaac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359677 |
gagaagtttaaccaaaaagtataccaccatcagaaatcaaac |
41359636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University