View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12242_low_1 (Length: 749)
Name: NF12242_low_1
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12242_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Original strand, 5395118 - 5395583
Alignment:
| Q |
11 |
gaacctgtggcgaaaacttgtaccactctttgttggagtaacactttcttcatgacatgatcctaaggaagaatcaacgttatatttgtacctaacactt |
110 |
Q |
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| T |
5395118 |
gaacctatggcgaaaacttgtaccactctttgttggagtaacactttcttcatgacatgatcctaaggaagaatcaacgttatatttgtacctaacactt |
5395217 |
T |
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| Q |
111 |
tcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctcttccacctctttgtattttactgttttcatcaaccggaacaa |
210 |
Q |
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| T |
5395218 |
tcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctcttccacctctttgtattttactgttttcatcaactggaacaa |
5395317 |
T |
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| Q |
211 |
aatgaaaacttgcggaacgttctgaattcaagacactattgctttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctg |
310 |
Q |
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| T |
5395318 |
aatgaaaactcgcggaacgttctgaattcaagacactattgctttgttccttctctttttctttctccttctccttttcatcctcagcttgatgatcctg |
5395417 |
T |
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| Q |
311 |
aagaaacttcttcatgcaactaagctctttctcaaggctttgaatacgtgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtg |
410 |
Q |
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| T |
5395418 |
aagaaacttcttcatgcaactaagctctttctcaaggctttgaatacgcgagtaggttgaattcatagcttctttaagttgtgcattttggcggagagtg |
5395517 |
T |
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| Q |
411 |
gtgtcgagttggagaaattctctaagtgaggttcgttgtacttctacattttgtcgagcattagtg |
476 |
Q |
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| T |
5395518 |
gtgtcgagttggagaaattctctaagtgaggttcgttgtacttctacatgttgtcgagcattagtg |
5395583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 494 - 736
Target Start/End: Original strand, 5395610 - 5395853
Alignment:
| Q |
494 |
tgctgcttcagtgattgagcggcgagtggtgaggtgttcaacaagaattgctcgaacgatgaatcttagtggcattatggggttttgaacacattcgact |
593 |
Q |
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| T |
5395610 |
tgctgcttcggtgattgagcggcgagtggtgaggtgttcaacaagaattgctcgaacgatgaatcttagtggcattatggggttttgaacacattcgact |
5395709 |
T |
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| Q |
594 |
agggtacgaggtgagagcttagtacaatctattgaattgcatatttctgttttttgttcttctgttactttgccatgcttgttttccttcacacatatag |
693 |
Q |
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| T |
5395710 |
agggtacgaggtgagagcttagtacaatctattgaattgcatatttctgttttttgttcttctgttactttgccatgcttgttttccttcacacatatag |
5395809 |
T |
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| Q |
694 |
caaacaacatccataaatt-gaaaaatcagtaatagtaataact |
736 |
Q |
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| T |
5395810 |
caaacaacatccataaattggaaaaatcagtaatagtaataact |
5395853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 5394536 - 5394596
Alignment:
| Q |
109 |
tttcattatttttcttgatcatgttatcaagcacaaaaccggaggaagaaatagagcctct |
169 |
Q |
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| T |
5394536 |
tttcattgtttttcttgatcatgttatcaagcaaaaaaccaaaggacgaaacagagtctct |
5394596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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