View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12242_low_12 (Length: 239)
Name: NF12242_low_12
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12242_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 40383201 - 40383266
Alignment:
| Q |
75 |
actctctccatctaacattagggtgtcctattttagttttacaccattgaaatgcaataaataagg |
140 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40383201 |
actctctccgtctaacattagggtgtcctattttagttttacatgattgaaatgcaataaataagg |
40383266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 28111571 - 28111627
Alignment:
| Q |
20 |
ggtcagacaccaccatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
76 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111571 |
ggtcagacaccactatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
28111627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 40393309 - 40393389
Alignment:
| Q |
143 |
tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattctt |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||| || |||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
40393309 |
tattatcatcaaatcaattgtcctatccaatgttatatgcaatgggaataacaaagttcttttgatatacaatccattctt |
40393389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 52412202 - 52412122
Alignment:
| Q |
143 |
tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattctt |
223 |
Q |
| |
|
||||| |||||||||||||||| | |||| ||||| || ||| |||||| ||||||||| || |||||||| ||||||| |
|
|
| T |
52412202 |
tattagcatcaaatcaattgtattgtccaatattatatgaaatgagaataaaaaagttattctgctatacaattcattctt |
52412122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 34325896 - 34325847
Alignment:
| Q |
27 |
caccaccatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
76 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34325896 |
caccaccaattcatccaatttcctatacatggaactcaccgaaaaggaac |
34325847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 14677025 - 14676955
Alignment:
| Q |
143 |
tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatataca |
213 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| || |||| ||||||| |||||| | |||||||||| |
|
|
| T |
14677025 |
tattatcaacaaatcaattgtactatccaatattatatgcaatgggaataataaagttctcttgatataca |
14676955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University