View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12242_low_13 (Length: 204)

Name: NF12242_low_13
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12242_low_13
NF12242_low_13
[»] chr1 (30 HSPs)
chr1 (20-156)||(25990279-25990414)
chr1 (20-70)||(45701327-45701377)
chr1 (20-70)||(29233986-29234036)
chr1 (22-72)||(42888572-42888622)
chr1 (22-70)||(1605395-1605443)
chr1 (21-69)||(25086483-25086531)
chr1 (22-69)||(34521204-34521251)
chr1 (20-70)||(39452459-39452510)
chr1 (23-66)||(40735020-40735063)
chr1 (23-70)||(48681948-48681995)
chr1 (23-69)||(3393583-3393629)
chr1 (20-70)||(42045384-42045434)
chr1 (23-69)||(48100722-48100768)
chr1 (25-70)||(1794595-1794640)
chr1 (21-70)||(16533046-16533095)
chr1 (20-69)||(28832183-28832232)
chr1 (22-59)||(32962573-32962610)
chr1 (25-70)||(50595900-50595945)
chr1 (22-70)||(5907798-5907846)
chr1 (22-70)||(7158772-7158820)
chr1 (20-68)||(10889354-10889402)
chr1 (26-70)||(14520943-14520987)
chr1 (22-70)||(16826353-16826401)
chr1 (26-70)||(24695558-24695602)
chr1 (22-70)||(28032283-28032331)
chr1 (20-68)||(29987124-29987172)
chr1 (20-68)||(40227830-40227878)
chr1 (22-70)||(44243872-44243920)
chr1 (22-70)||(45140020-45140068)
chr1 (26-70)||(52043272-52043316)
[»] chr7 (22 HSPs)
chr7 (99-188)||(42054829-42054918)
chr7 (23-70)||(13955479-13955526)
chr7 (20-70)||(44558786-44558836)
chr7 (21-70)||(27993042-27993091)
chr7 (22-59)||(44595652-44595689)
chr7 (22-70)||(19416513-19416561)
chr7 (26-70)||(23198767-23198811)
chr7 (26-70)||(46207759-46207803)
chr7 (26-70)||(47589571-47589615)
chr7 (23-69)||(3533023-3533069)
chr7 (20-70)||(30463961-30464011)
chr7 (20-49)||(6565545-6565574)
chr7 (25-70)||(20131843-20131888)
chr7 (22-70)||(1079706-1079754)
chr7 (26-70)||(6528823-6528867)
chr7 (22-70)||(7670433-7670481)
chr7 (23-63)||(9522918-9522958)
chr7 (22-70)||(10244726-10244774)
chr7 (22-70)||(33473535-33473583)
chr7 (23-63)||(47342683-47342723)
chr7 (26-70)||(47677595-47677639)
chr7 (23-75)||(48069852-48069904)
[»] chr3 (18 HSPs)
chr3 (22-70)||(22722401-22722449)
chr3 (20-63)||(52575953-52575996)
chr3 (20-70)||(21506770-21506820)
chr3 (22-72)||(32629077-32629127)
chr3 (22-80)||(32909315-32909373)
chr3 (22-70)||(25340938-25340986)
chr3 (22-70)||(28244118-28244166)
chr3 (22-70)||(43345021-43345069)
chr3 (22-70)||(43490431-43490479)
chr3 (22-70)||(44579635-44579683)
chr3 (23-69)||(7202931-7202977)
chr3 (25-75)||(14827519-14827569)
chr3 (20-70)||(32843274-32843324)
chr3 (23-69)||(42269298-42269344)
chr3 (23-68)||(51505874-51505919)
chr3 (20-69)||(53996299-53996348)
chr3 (22-70)||(3149090-3149138)
chr3 (22-70)||(10498709-10498757)
[»] chr6 (18 HSPs)
chr6 (23-76)||(24269876-24269929)
chr6 (22-70)||(12333582-12333630)
chr6 (22-70)||(20847525-20847573)
chr6 (22-70)||(21373420-21373468)
chr6 (22-70)||(26320577-26320625)
chr6 (23-75)||(32193874-32193926)
chr6 (23-70)||(9444956-9445003)
chr6 (23-70)||(12266794-12266841)
chr6 (23-70)||(26587391-26587438)
chr6 (23-70)||(33938694-33938741)
chr6 (20-70)||(4494883-4494933)
chr6 (20-70)||(20744137-20744187)
chr6 (20-70)||(29335587-29335637)
chr6 (20-70)||(30639438-30639488)
chr6 (22-70)||(9111046-9111094)
chr6 (21-69)||(12700434-12700482)
chr6 (22-70)||(16130764-16130812)
chr6 (22-70)||(21296757-21296805)
[»] chr2 (20 HSPs)
chr2 (23-68)||(16221361-16221406)
chr2 (25-66)||(29133501-29133542)
chr2 (20-69)||(41859852-41859901)
chr2 (20-72)||(23718932-23718984)
chr2 (20-72)||(24106604-24106656)
chr2 (23-70)||(24305320-24305367)
chr2 (23-70)||(27889288-27889335)
chr2 (30-68)||(1901507-1901545)
chr2 (22-75)||(19976147-19976201)
chr2 (25-63)||(33567667-33567705)
chr2 (20-70)||(42475122-42475172)
chr2 (20-70)||(43117202-43117252)
chr2 (29-70)||(17736792-17736833)
chr2 (25-70)||(32204543-32204588)
chr2 (25-70)||(34464426-34464471)
chr2 (22-70)||(12124544-12124592)
chr2 (22-70)||(25186256-25186304)
chr2 (25-69)||(30762512-30762556)
chr2 (20-48)||(36193956-36193984)
chr2 (26-70)||(40365424-40365468)
[»] chr4 (27 HSPs)
chr4 (22-70)||(35287521-35287569)
chr4 (22-70)||(9946426-9946474)
chr4 (22-70)||(38453264-38453312)
chr4 (22-69)||(3936627-3936674)
chr4 (20-63)||(16431622-16431665)
chr4 (22-69)||(19479491-19479538)
chr4 (22-69)||(28031812-28031859)
chr4 (20-70)||(2186345-2186395)
chr4 (22-68)||(11198329-11198375)
chr4 (23-69)||(28435263-28435309)
chr4 (22-68)||(37921747-37921793)
chr4 (24-70)||(44189003-44189049)
chr4 (20-70)||(52270042-52270092)
chr4 (22-63)||(241398-241439)
chr4 (25-70)||(9913898-9913943)
chr4 (25-70)||(12671765-12671810)
chr4 (22-75)||(20383482-20383535)
chr4 (25-70)||(32430140-32430185)
chr4 (20-77)||(48226510-48226567)
chr4 (22-70)||(10401410-10401458)
chr4 (22-70)||(14079251-14079298)
chr4 (22-66)||(16304112-16304156)
chr4 (22-70)||(19588153-19588201)
chr4 (22-70)||(37193248-37193296)
chr4 (22-70)||(40070982-40071030)
chr4 (21-69)||(49021766-49021814)
chr4 (22-70)||(54857629-54857677)
[»] scaffold0122 (1 HSPs)
scaffold0122 (18-77)||(14196-14255)
[»] chr5 (25 HSPs)
chr5 (20-75)||(26590701-26590756)
chr5 (22-70)||(6624775-6624823)
chr5 (23-75)||(27903107-27903159)
chr5 (22-70)||(28207131-28207179)
chr5 (27-70)||(6234819-6234862)
chr5 (22-69)||(10704345-10704392)
chr5 (23-70)||(16193106-16193153)
chr5 (25-75)||(22665220-22665270)
chr5 (22-75)||(39529441-39529495)
chr5 (21-70)||(8350669-8350718)
chr5 (29-70)||(8410466-8410507)
chr5 (20-69)||(18489088-18489137)
chr5 (25-70)||(22619873-22619918)
chr5 (23-68)||(25385053-25385098)
chr5 (18-75)||(29178441-29178498)
chr5 (22-70)||(18278273-18278321)
chr5 (22-70)||(18589881-18589929)
chr5 (23-63)||(31602840-31602880)
chr5 (20-60)||(31708158-31708198)
chr5 (23-75)||(32622889-32622941)
chr5 (21-69)||(32675306-32675354)
chr5 (18-70)||(32760509-32760561)
chr5 (22-70)||(32858669-32858717)
chr5 (22-70)||(37932329-37932377)
chr5 (22-70)||(39980507-39980555)
[»] scaffold0735 (1 HSPs)
scaffold0735 (22-72)||(1525-1575)
[»] scaffold0031 (1 HSPs)
scaffold0031 (20-70)||(47253-47303)
[»] chr8 (16 HSPs)
chr8 (29-75)||(26885659-26885705)
chr8 (23-72)||(30694454-30694503)
chr8 (22-70)||(24023429-24023477)
chr8 (23-70)||(8717490-8717537)
chr8 (23-70)||(32555253-32555300)
chr8 (20-70)||(1644685-1644735)
chr8 (16-70)||(17704012-17704066)
chr8 (20-70)||(39433409-39433459)
chr8 (23-72)||(14279586-14279635)
chr8 (26-75)||(37750017-37750066)
chr8 (18-70)||(498730-498782)
chr8 (22-70)||(6447188-6447236)
chr8 (21-69)||(12910819-12910867)
chr8 (22-70)||(14975877-14975925)
chr8 (22-70)||(29499770-29499818)
chr8 (22-66)||(40919373-40919417)
[»] scaffold0154 (2 HSPs)
scaffold0154 (22-75)||(37529-37582)
scaffold0154 (23-70)||(10772-10819)
[»] scaffold0352 (1 HSPs)
scaffold0352 (22-70)||(12643-12691)
[»] scaffold0016 (1 HSPs)
scaffold0016 (23-62)||(204597-204636)
[»] scaffold0259 (1 HSPs)
scaffold0259 (20-66)||(5416-5462)
[»] scaffold0188 (1 HSPs)
scaffold0188 (20-70)||(28125-28175)
[»] scaffold0180 (1 HSPs)
scaffold0180 (22-76)||(17725-17779)
[»] scaffold0012 (1 HSPs)
scaffold0012 (20-70)||(118818-118868)
[»] scaffold0334 (1 HSPs)
scaffold0334 (20-69)||(5182-5231)
[»] scaffold0087 (1 HSPs)
scaffold0087 (21-70)||(44776-44825)
[»] scaffold0011 (1 HSPs)
scaffold0011 (25-70)||(185262-185307)
[»] scaffold0006 (1 HSPs)
scaffold0006 (22-70)||(223691-223739)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 1e-33; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 25990279 - 25990414
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaacctctaagttatgttttagtataaaagatggttttctaagacaat 119  Q
    ||||||||| ||||||||| |||| | ||||||||||||| |||  | || || ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  25990279 cagaccttgtatattttatacattatccatgctaactgagttaagtttac-tggacctctaagttatgttttactataaaaaatggttttctaagacaat 25990377  T
Q  120 attgagaatgctataattaaaccccatgtgtctacat 156  Q
    ||||||||| ||||||||||||| ||||| |||||||    
T  25990378 attgagaatactataattaaacctcatgtctctacat 25990414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 45701377 - 45701327
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  45701377 cagaccttacatattttatgcattgttcataccaactgagctaaactcacg 45701327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 29233986 - 29234036
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||||  || | ||||||||||||||||||    
T  29233986 cagaccttgcatattttatgcattgtctataccaactgagctaaactcacg 29234036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 42888622 - 42888572
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtg 72  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  42888622 gaccttgcatattttatgcattgtccataccaactgagctaagctcacgtg 42888572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 1605443 - 1605395
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| |||||| |||||| ||||||    
T  1605443 gaccttgcatattttatgcattgtccatactaactaagctaagctcacg 1605395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 25086531 - 25086483
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||||||||||||||||| ||| | ||||||||||| |||||    
T  25086531 agaccttgcatattttatgcattgtccataccaactgagctaagctcac 25086483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 34521204 - 34521251
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||| ||||||||||| ||| | |||||||||||||||||    
T  34521204 gaccttgcatatattatgcattgtccataccaactgagctaaactcac 34521251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 39452510 - 39452459
Alignment:
Q  20 cagaccttgcatatttt-atgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||| ||||||    
T  39452510 cagaccttgcatatttttatgcattgttcataccaactgagctaagctcacg 39452459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 40735020 - 40735063
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaact 66  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||    
T  40735020 accttacatattttatgcattgtccatactaactgagctaaact 40735063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 48681948 - 48681995
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||| ||||||||||||||| | ||||||||||| ||||||    
T  48681948 accttgcatatattatgcattgttcataccaactgagctaagctcacg 48681995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 3393583 - 3393629
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||| |||||||||||||||   |||||||||||||||||    
T  3393583 accttgcatatattatgcattgttcatatcaactgagctaaactcac 3393629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 42045384 - 42045434
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  42045384 cagaccttgcatatattatgcattgtccataccaactgagctaagctcacg 42045434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 48100768 - 48100722
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||||||||||||||| ||| | ||||||||||| |||||    
T  48100768 accttgcatattttatgcattgtccataccaactgagctaagctcac 48100722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 1794640 - 1794595
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||| ||||||||||| ||| ||||||||||||| ||||||    
T  1794640 cttgcatatattatgcattgtccatactaactgagctaagctcacg 1794595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 16533046 - 16533095
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||| ||||||||||||| | | ||| ||||||||||||||    
T  16533046 agaccttgcatatattatgcattgttcctaccaaccgagctaaactcacg 16533095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 28832183 - 28832232
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||| ||||||||||||||| | ||||||| ||| |||||    
T  28832183 cagaccttgcatatattatgcattgttcataccaactgagttaagctcac 28832232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 32962610 - 32962573
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgag 59  Q
    |||||||||||||||||||||||||||| | |||||||    
T  32962610 gaccttgcatattttatgcattgttcataccaactgag 32962573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 50595900 - 50595945
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||| | || |||||||| ||||||    
T  50595900 cttgcatattttatgcattgttcataccaattgagctaagctcacg 50595945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 5907846 - 5907798
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| | ||| ||||||||||| ||||||    
T  5907846 gaccttgcatatattatgcattgtccttgccaactgagctaagctcacg 5907798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 7158820 - 7158772
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| |||   ||||| ||||||||||||    
T  7158820 gaccttgcatattttatgcattgtccatatcaactgggctaaactcacg 7158772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 10889354 - 10889402
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    |||||||||||||||||||||||| ||||| | ||| ||||||| ||||    
T  10889354 cagaccttgcatattttatgcattcttcattccaaccgagctaagctca 10889402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 14520987 - 14520943
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||| ||| | ||||||||||| ||||||    
T  14520987 ttgcatattttatgcattgtccataccaactgagctaagctcacg 14520943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 16826401 - 16826353
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| |||   ||||||||||| ||||||    
T  16826401 gaccttgcatattttatgcattgtccatagcaactgagctaagctcacg 16826353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 24695602 - 24695558
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||| ||||| ||||||||| | ||||||||||||||||||    
T  24695602 ttgcatatattatgtattgttcataccaactgagctaaactcacg 24695558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 28032331 - 28032283
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||||  | ||||| ||||||||||||||    
T  28032331 gaccttgcatatattatgcattgtttttactaaccgagctaaactcacg 28032283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 29987124 - 29987172
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    |||||||||||||| ||||||||||| | ||| ||||||| ||||||||    
T  29987124 cagaccttgcatatattatgcattgtccttgccaactgagttaaactca 29987172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 40227878 - 40227830
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    ||||||||| |||||||||||||||| ||| | ||||||||||| ||||    
T  40227878 cagaccttgtatattttatgcattgtccataccaactgagctaagctca 40227830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 44243920 - 44243872
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||| ||||| ||||||||||||| | | ||||||||||||||||||    
T  44243920 gaccttacatatattatgcattgttcctaccaactgagctaaactcacg 44243872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 45140020 - 45140068
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  45140020 gaccttgcatatattatgcattgtccataccaactgagctaagctcacg 45140068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 52043316 - 52043272
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||| | ||| | ||||||||||||||||||    
T  52043316 ttgcatattttatgcattatccataccaactgagctaaactcacg 52043272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 42054829 - 42054918
Alignment:
Q  99 aagatggttttctaagacaatattgagaatgctataattaaaccccatgtgtctacatnnnnnnntatgtactaatcagttcttttttct 188  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||       |||| |||||||| |||||||||||    
T  42054829 aagatggttttctaagagaatattgagaatattataattaaaccccatgtgtctatataaaaacctatgcactaatcatttcttttttct 42054918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 13955526 - 13955479
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  13955526 accttgcatattttatgcattgttcataccaactgagctaagctcacg 13955479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 44558786 - 44558836
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  44558786 cagaccttgcatatattatgcattgtccataccaactgagctaaactcacg 44558836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 27993042 - 27993091
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||||||| | ||||||| ||| ||||||    
T  27993042 agaccttgcatattttatgcattgttcataccaactgagttaagctcacg 27993091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 44595652 - 44595689
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgag 59  Q
    |||||||||||||||||||||||||||| |||||||||    
T  44595652 gaccttgcatattttatgcattgttcatactaactgag 44595689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 19416561 - 19416513
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  19416561 gaccttgcatattttatgcattgtccataccaactgagctaagctcacg 19416513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 23198767 - 23198811
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||    
T  23198767 ttgcatattttatgcattgttcataccaactgagttaaactcacg 23198811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 46207803 - 46207759
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||    
T  46207803 ttgcatattttatgcattgttcataccaactgagctaagctcacg 46207759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 47589571 - 47589615
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| | ||||||||||| ||||||    
T  47589571 ttgcatattttatgcattgttcataccaactgagctaagctcacg 47589615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 3533023 - 3533069
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||| ||||||||||| | | |||||||||||||||||||    
T  3533023 accttgcatatattatgcattgtccttactaactgagctaaactcac 3533069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 30463961 - 30464011
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||| |  || ||||||||||||||||||||    
T  30463961 cagaccttgcatatattatgcattatctatactaactgagctaaactcacg 30464011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 6565574 - 6565545
Alignment:
Q  20 cagaccttgcatattttatgcattgttcat 49  Q
    ||||||||||||||||||||||||||||||    
T  6565574 cagaccttgcatattttatgcattgttcat 6565545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 20131888 - 20131843
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||| ||| ||||||||||||||||| ||||||||||| ||||||    
T  20131888 cttgcgtatattatgcattgttcatgccaactgagctaagctcacg 20131843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 1079706 - 1079754
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||||   ||||||||| ||| ||||||    
T  1079706 gaccttgcatattttatgcattgttccaactaactgagttaagctcacg 1079754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 6528823 - 6528867
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||| ||| | |||||||||| |||||||    
T  6528823 ttgcatattttatgcattgtccataccaactgagctagactcacg 6528867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 7670481 - 7670433
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||||||  | ||||||||||| ||||||    
T  7670481 gaccttgcatatattatgcattgttcaaaccaactgagctaagctcacg 7670433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 9522958 - 9522918
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaa 63  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  9522958 accttgcatatattatgcattgttcataccaactgagctaa 9522918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 10244774 - 10244726
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  10244774 gaccttgcatatattatgcattgtccataccaactgagctaagctcacg 10244726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 33473535 - 33473583
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| | |||| ||||| |||||||||||    
T  33473535 gaccttgcatatattatgcattgtccttgctgactgaactaaactcacg 33473583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 47342723 - 47342683
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaa 63  Q
    ||||||||||||||||||||||| ||| | |||||||||||    
T  47342723 accttgcatattttatgcattgtccataccaactgagctaa 47342683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 47677595 - 47677639
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||   | ||||||||||||||||||    
T  47677595 ttgcatattttatgcattgttctaaccaactgagctaaactcacg 47677639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 48069852 - 48069904
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||| ||||| ||||||||||||||||  ||||||||||| |||||| ||||    
T  48069852 accttacatatattatgcattgttcatgtcaactgagctaagctcacgagaac 48069904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 22722449 - 22722401
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  22722449 gaccttgcatattttatgcattgttcatactaactgagctaagctcacg 22722401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 52575996 - 52575953
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaa 63  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  52575996 cagaccttgcatattttatgcattgttcataccaactgagctaa 52575953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 21506770 - 21506820
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  21506770 cagaccttgcatattttatgcattgtccataccaactgagctaagctcacg 21506820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 32629127 - 32629077
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtg 72  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  32629127 gaccttgcatattttatgcattgtccataccaactgagctaagctcacgtg 32629077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 32909315 - 32909373
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaacctcta 80  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| |||||| |||| ||||    
T  32909315 gaccttgcatattttatgcattgtccatactaactgagttaagctcacgagaacttcta 32909373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 25340938 - 25340986
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  25340938 gaccttgcatattttatgcattgtccataccaactgagctaagctcacg 25340986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 28244118 - 28244166
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||||||| | ||||||| ||| ||||||    
T  28244118 gaccttgcatattttatgcattgttcataccaactgagttaagctcacg 28244166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 43345021 - 43345069
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  43345021 gaccttgcatatattatgtattgttcataccaactgagctaaactcacg 43345069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 43490431 - 43490479
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||||||| | ||||||||||| ||||||    
T  43490431 gaccttgcatatattatgcattgttcataccaactgagctaagctcacg 43490479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 44579683 - 44579635
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  44579683 gaccttgcatattttatgcattgtccataccaactgagctaagctcacg 44579635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 7202931 - 7202977
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||||||||||||||   | |||||||||||||||||    
T  7202931 accttgcatattttatgcattgttccaaccaactgagctaaactcac 7202977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 14827569 - 14827519
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||||||||||||||||||| ||| | ||||||||||| |||||| ||||    
T  14827569 cttgcatattttatgcattgtccataccaactgagctaagctcacgagaac 14827519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 32843274 - 32843324
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||||| ||  | ||||||||||| ||||||    
T  32843274 cagaccttgcatattttatgcattgtccaaaccaactgagctaagctcacg 32843324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 42269344 - 42269298
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||| ||||| ||||||||||| ||| |||||||||||||||||||    
T  42269344 accttacatatattatgcattgtccatactaactgagctaaactcac 42269298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 51505919 - 51505874
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    ||||||||||||||||||||||| |||   ||||||||||||||||    
T  51505919 accttgcatattttatgcattgtccatatcaactgagctaaactca 51505874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 53996348 - 53996299
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||| ||||||||||| ||| | ||||||||||| |||||    
T  53996348 cagaccttgcatatattatgcattgtccataccaactgagctaagctcac 53996299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 3149090 - 3149138
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||||||| | ||||||| ||| ||||||    
T  3149090 gaccttgcatatttgatgcattgttcatacaaactgagttaagctcacg 3149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 10498709 - 10498757
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  10498709 gaccttgcatatattatgcattgtccataccaactgagctaagctcacg 10498757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 24269929 - 24269876
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaacc 76  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||    
T  24269929 accttgcatattttatgcattgtccatactaactgagctaagctcacgagaacc 24269876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 12333582 - 12333630
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  12333582 gaccttgcatattttatgcattgtccatactaactgagctaagctcacg 12333630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 20847525 - 20847573
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||  ||||||||||||| ||||||    
T  20847525 gaccttgcatattttatgcattgtccaaactaactgagctaagctcacg 20847573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 21373420 - 21373468
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | || |||||||||||||||    
T  21373420 gaccttgcatattttatgcattgtccataccaattgagctaaactcacg 21373468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 26320577 - 26320625
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  26320577 gaccttgcatattttatgcattgtccataccaactgagctaagctcacg 26320625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 32193874 - 32193926
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||||||||| ||||||||||||| | | |||||||||||||||||| ||||    
T  32193874 accttgcatatattatgcattgttcttaccaactgagctaaactcacgagaac 32193926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 9445003 - 9444956
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||| |||||||||| | ||||||||||| ||||||    
T  9445003 accttgcatattttatacattgttcataccaactgagctaagctcacg 9444956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 12266841 - 12266794
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||  |||||||||||||||| |||||||| ||||||||||    
T  12266841 accttgcatacattatgcattgttcatgataactgagttaaactcacg 12266794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 26587438 - 26587391
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||| ||||||||||||| | ||||||||||||||| ||||    
T  26587438 accttgcatatattatgcattgttcttactaactgagctaaacccacg 26587391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 33938694 - 33938741
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||| ||||||||||||||| | ||||||||||| ||||||    
T  33938694 accttgcatatattatgcattgttcataccaactgagctaagctcacg 33938741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 4494883 - 4494933
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||| |||||||||||||||||| ||| | ||||||||||| ||||||    
T  4494883 cagacctcgcatattttatgcattgtccataccaactgagctaagctcacg 4494933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 20744187 - 20744137
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  20744187 cagaccttgcatatattatgcattgtccataccaactgagctaagctcacg 20744137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 29335587 - 29335637
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| |||||||||||| || ||||||||| ||| ||||||    
T  29335587 cagaccttgcatatattatgcattgtttatactaactgagttaagctcacg 29335637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 30639438 - 30639488
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||| ||| | | ||||||||||||||||||    
T  30639438 cagaccttgcatatattatgcattattcctaccaactgagctaaactcacg 30639488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 9111094 - 9111046
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||||||| | |||||| |||| ||||||    
T  9111094 gaccttgcatatattatgcattgttcataccaactgaactaagctcacg 9111046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 12700434 - 12700482
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||||| ||||||||||||||| | |||||| |||| |||||    
T  12700434 agaccttgcatatattatgcattgttcataccaactgaactaagctcac 12700482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 16130812 - 16130764
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | |||| |||||| ||||||    
T  16130812 gaccttgcatattttatgcattgtccataccaactaagctaagctcacg 16130764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 21296805 - 21296757
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| |   | ||||||||||||||||||    
T  21296805 gaccttgcatattttatgcattgtcccaaccaactgagctaaactcacg 21296757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 16221361 - 16221406
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||    
T  16221361 accttgcatattttatgcattgttcataccaactgagctaaactca 16221406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 29133501 - 29133542
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaact 66  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  29133501 cttgcatattttatgcattgttcataccaactgagctaaact 29133542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 41859901 - 41859852
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||||||||||||||| ||| | ||||||| |||||||||    
T  41859901 cagaccttgcatattttatgcattgtccataccaactgagttaaactcac 41859852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 23718984 - 23718932
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtg 72  Q
    ||||||||||||||||||||| |||||||    ||||||||||||||||||||    
T  23718984 cagaccttgcatattttatgcgttgttcaaatcaactgagctaaactcacgtg 23718932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 24106656 - 24106604
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtg 72  Q
    ||||||||||||||||||||| |||||||    ||||||||||||||||||||    
T  24106656 cagaccttgcatattttatgcgttgttcaaatcaactgagctaaactcacgtg 24106604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 24305320 - 24305367
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||| |||  |||||||||||| ||||||    
T  24305320 accttgcatattttatgcattgtccatattaactgagctaagctcacg 24305367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 27889335 - 27889288
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||| |||||||||||||||||||||| ||||||| |||| ||||||    
T  27889335 accttacatattttatgcattgttcatgataactgaactaagctcacg 27889288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 1901545 - 1901507
Alignment:
Q  30 atattttatgcattgttcatgctaactgagctaaactca 68  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  1901545 atattttatgcattgttcatactaactgagttaaactca 1901507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 19976201 - 19976147
Alignment:
Q  22 gaccttgcatatt-ttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||||||| ||||    
T  19976201 gaccttgcatattattatgcattgtccataccaactgagctaaactcacgagaac 19976147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 33567705 - 33567667
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaa 63  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  33567705 cttgcatatttcatgcattgttcatgccaactgagctaa 33567667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 42475122 - 42475172
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||||| || | ||||||| ||| ||||||    
T  42475122 cagaccttgcatattttatgcattgtttataccaactgagttaagctcacg 42475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 43117202 - 43117252
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||||| | | | ||||||||||||||||||    
T  43117202 cagaccttgcatatattatgcattgtccttaccaactgagctaaactcacg 43117252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 17736833 - 17736792
Alignment:
Q  29 catattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||| | ||||||||||| ||||||    
T  17736833 catattttatgcattgttcataccaactgagctaagctcacg 17736792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 32204588 - 32204543
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||| ||||||||||||||||| || |||||||| ||||||    
T  32204588 cttgcatatattatgcattgttcatgccaattgagctaagctcacg 32204543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 34464426 - 34464471
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  34464426 cttgcatatattatgcattgtccataccaactgagctaaactcacg 34464471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 12124592 - 12124544
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| | | | ||||||||||||||||||    
T  12124592 gaccttgcatatattatgcattgtccttaccaactgagctaaactcacg 12124544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 25186256 - 25186304
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| |||   ||||||||||||||||||    
T  25186256 gaccttgcatatattatgcattgtccatatcaactgagctaaactcacg 25186304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 30762512 - 30762556
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||||||||||  || | |||||||||||||||||    
T  30762512 cttgcatattttatgcattgtctataccaactgagctaaactcac 30762556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 36193956 - 36193984
Alignment:
Q  20 cagaccttgcatattttatgcattgttca 48  Q
    |||||||||||||||||||||||||||||    
T  36193956 cagaccttgcatattttatgcattgttca 36193984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 40365424 - 40365468
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||| ||| | ||||||||||| ||||||    
T  40365424 ttgcatattttatgcattgtacataccaactgagctaagctcacg 40365468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 35287521 - 35287569
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  35287521 gaccttgcatattttatgcattgttcataccaactgagctaagctcacg 35287569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 9946474 - 9946426
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  9946474 gaccttgcatattttatgcattgtccataccaactgagctaagctcacg 9946426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 38453312 - 38453264
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  38453312 gaccttgcatatattatgcattgtccatgccaactgagctaagctcacg 38453264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 3936674 - 3936627
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||| ||||||||||||||| | ||||||||||| |||||    
T  3936674 gaccttgcatatattatgcattgttcataccaactgagctaagctcac 3936627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 16431665 - 16431622
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaa 63  Q
    |||||||||||||||||||||||||| ||| | |||||||||||    
T  16431665 cagaccttgcatattttatgcattgtccataccaactgagctaa 16431622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 19479491 - 19479538
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||| |||||||||||||||  |||||||||||| |||||    
T  19479491 gaccttgcatatattatgcattgttcatattaactgagctaagctcac 19479538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 28031859 - 28031812
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||||||||||||||||||   | |||||||||||||||||    
T  28031859 gaccttgcatattttatgcattgttccaaccaactgagctaaactcac 28031812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 2186345 - 2186395
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  2186345 cagaccttgcatatattatgcattgtccataccaactgagctaagctcacg 2186395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 11198375 - 11198329
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    |||||||||||| |||||| |||| ||| ||||||||||||||||||    
T  11198375 gaccttgcatatattatgccttgtccattctaactgagctaaactca 11198329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 28435263 - 28435309
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||| ||||||||||| ||| | |||||||||||||||||    
T  28435263 accttgcatatattatgcattgtccataccaactgagctaaactcac 28435309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 37921793 - 37921747
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    |||||||||||| ||||||||||| | | ||||||||||||||||||    
T  37921793 gaccttgcatatattatgcattgtccttactaactgagctaaactca 37921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 44189003 - 44189049
Alignment:
Q  24 ccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||| ||||||||| | ||||| ||||||||||||||||||    
T  44189003 ccttgcatatattatgcattatccatgccaactgagctaaactcacg 44189049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 52270042 - 52270092
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  52270042 cagaccttgcatatattatgcattgtccataccaactgagctaagctcacg 52270092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 241398 - 241439
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaa 63  Q
    |||||||||||||||||||||||||||| | ||| |||||||    
T  241398 gaccttgcatattttatgcattgttcataccaaccgagctaa 241439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 9913943 - 9913898
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||| |||||||||||||||||||| | ||||||||||| ||||||    
T  9913943 cttgtatattttatgcattgttcataccaactgagctaagctcacg 9913898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 12671765 - 12671810
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||  || | ||||||||||||||||||    
T  12671765 cttgcatattttatgcattgtctataccaactgagctaaactcacg 12671810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 20383535 - 20383482
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    |||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||||    
T  20383535 gaccttgcatatattatgcattgtccataccaactgagctaagctcacatgaac 20383482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 32430140 - 32430185
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||| |||||||||||||||||||| ||||||||| ||| ||||||    
T  32430140 cttgtatattttatgcattgttcatactaactgagttaagctcacg 32430185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 48226510 - 48226567
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaacct 77  Q
    |||||||||||||||||||||||||| ||| | || ||||||||  ||||||| ||||    
T  48226510 cagaccttgcatattttatgcattgtccataccaattgagctaagttcacgtggacct 48226567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 10401410 - 10401458
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||| |||||||||||||| | |||||| |||| ||||||    
T  10401410 gaccttgcatattgtatgcattgttcataccaactgaactaagctcacg 10401458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 14079298 - 14079251
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| |||||||||||| || | ||||||||||||||||||    
T  14079298 gaccttgcatatattatgcattgttaatac-aactgagctaaactcacg 14079251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 16304112 - 16304156
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaact 66  Q
    |||||||||||| ||||||||||| ||| | ||||||||||||||    
T  16304112 gaccttgcatatattatgcattgtccataccaactgagctaaact 16304156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 19588201 - 19588153
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | || |||||||| ||||||    
T  19588201 gaccttgcatattttatgcattgtccataccaattgagctaagctcacg 19588153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 37193296 - 37193248
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| |||| |||||| ||| ||||||||||||| ||||||    
T  37193296 gaccttgcatatattatacattgtccatactaactgagctaagctcacg 37193248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 40070982 - 40071030
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||||||| | ||||||| ||| ||||||    
T  40070982 gaccttgcatatattatgcattgttcataccaactgagttaagctcacg 40071030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 49021814 - 49021766
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||||||||||| ||||| ||| | ||||| |||||||||||    
T  49021814 agaccttgcatattttatgtattgtccataccaactgcgctaaactcac 49021766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 54857629 - 54857677
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||| || | ||| ||||||| ||||||    
T  54857629 gaccttgcatattttatgcattgtttataccaaccgagctaagctcacg 54857677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 14196 - 14255
Alignment:
Q  18 cacagaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaacct 77  Q
    |||| ||||||||||| ||||||||||||||| | ||||||| |||||||||| ||||||    
T  14196 cacataccttgcatatattatgcattgttcataccaactgagttaaactcacgagaacct 14255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 26590756 - 26590701
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    |||||||||||||| ||||||||||| | |||||||| ||||||||||||| ||||    
T  26590756 cagaccttgcatatattatgcattgtccttgctaactaagctaaactcacgagaac 26590701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 6624823 - 6624775
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  6624823 gaccttgcatatattatgcattgtccatgccaactgagctaagctcacg 6624775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 27903159 - 27903107
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||||||||| ||||||||||||||| | |||||| ||||||||||| ||||    
T  27903159 accttgcatatattatgcattgttcataccaactgaactaaactcacgagaac 27903107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 28207179 - 28207131
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  28207179 gaccttgcatattttatgcattgtccataccaactgagctaagctcacg 28207131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 6234819 - 6234862
Alignment:
Q  27 tgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||||    
T  6234819 tgcatatattatgcattgttcatactaactgagctaagctcacg 6234862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 10704345 - 10704392
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||||||||||||| ||| | ||||||||||| |||||    
T  10704345 gaccttgcatattttatgcattgtccataccaactgagctaagctcac 10704392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 16193153 - 16193106
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||| ||||||||||||||||||||| | |||||| |||||||||||    
T  16193153 accttacatattttatgcattgttcataccaactgaactaaactcacg 16193106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 22665220 - 22665270
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    |||||||||||||| |||||| ||| ||||||||||||| |||||| ||||    
T  22665220 cttgcatattttatacattgtccatactaactgagctaagctcacgagaac 22665270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 39529495 - 39529441
Alignment:
Q  22 gaccttgcatatttt-atgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||||||||||||| ||||||||| | ||||||||||||||| |||||| ||||    
T  39529495 gaccttgcatatttttatgcattgtccctgctaactgagctaagctcacgagaac 39529441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 8350718 - 8350669
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||| |||||||| ||||||||||| ||||| ||||||| ||||||||||    
T  8350718 agactttgcatatattatgcattgtccatgccaactgagttaaactcacg 8350669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 8410466 - 8410507
Alignment:
Q  29 catattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  8410466 catattttatgcattgttcacactaactgagctaagctcacg 8410507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 18489088 - 18489137
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||| |||||||||||  || | |||||||||||||||||    
T  18489088 cagaccttgcatatattatgcattgtctataccaactgagctaaactcac 18489137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 22619918 - 22619873
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||| |||||||||||||||||||| | ||||||||||| ||||||    
T  22619918 cttgtatattttatgcattgttcataccaactgagctaagctcacg 22619873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 25385098 - 25385053
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactca 68  Q
    ||||||||||||||||||||||||||| | || |||| ||||||||    
T  25385098 accttgcatattttatgcattgttcataccaattgagttaaactca 25385053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29178498 - 29178441
Alignment:
Q  18 cacagaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||||||||| |||||||||||||||| ||| | ||||||| ||| |||||| ||||    
T  29178498 cacagaccttgtatattttatgcattgtccataccaactgagttaagctcacgagaac 29178441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 18278273 - 18278321
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||||| | | ||||||| ||||||||||    
T  18278273 gaccttgcatatattatgcattgttcttaccaactgagttaaactcacg 18278321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 18589881 - 18589929
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||||||| | ||||||| ||| ||||||    
T  18589881 gaccttgcatatattatgcattgttcataccaactgagttaagctcacg 18589929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 31602840 - 31602880
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaa 63  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  31602840 accttgcatatattatgcattgttcataccaactgagctaa 31602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 31708158 - 31708198
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagc 60  Q
    |||||||||||||| ||||||||||||||| | ||||||||    
T  31708158 cagaccttgcatatattatgcattgttcataccaactgagc 31708198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 32622941 - 32622889
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    |||||||||||||||| |||||| ||| | |||||||||||| ||||| ||||    
T  32622941 accttgcatattttatacattgtccataccaactgagctaaattcacgagaac 32622889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 32675306 - 32675354
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||||| ||||||||||||| ||| |||||| |||| |||||    
T  32675306 agaccttgcatatattatgcattgttcttgccaactgaactaagctcac 32675354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 32760561 - 32760509
Alignment:
Q  18 cacagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||| ||||||||||| || | |||| |||||| ||||||    
T  32760561 cacagaccttgcatattctatgcattgtttataccaactaagctaatctcacg 32760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 32858717 - 32858669
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | ||| ||||||| ||||||    
T  32858717 gaccttgcatattttatgcattgtccataccaacggagctaagctcacg 32858669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 37932377 - 37932329
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| ||| | ||||||||||| ||||||    
T  37932377 gaccttgcatatattatgcattgtccataccaactgagctaagctcacg 37932329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 39980555 - 39980507
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||| | ||| | ||||||||||| ||||||    
T  39980555 gaccttgcatattttatgcattatccataccaactgagctaagctcacg 39980507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 1575 - 1525
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtg 72  Q
    |||||||||||||||||||||||| ||| | ||||||||||| ||||||||    
T  1575 gaccttgcatattttatgcattgtccataccaactgagctaagctcacgtg 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 47253 - 47303
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  47253 cagaccttgcatattttatgcattgtccataccaactgagctaagctcacg 47303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 26885659 - 26885705
Alignment:
Q  29 catattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||    
T  26885659 catattttatgcattgttcataccaactgagctaaactcacgagaac 26885705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 30694454 - 30694503
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacgtg 72  Q
    ||||||||||||||||||||||||||| | ||||||| ||| ||||||||    
T  30694454 accttgcatattttatgcattgttcatacaaactgagataagctcacgtg 30694503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 24023429 - 24023477
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||||||   ||||||||||||| ||||||    
T  24023429 gaccttgcatattttatgcattgttccaactaactgagctaagctcacg 24023477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 8717490 - 8717537
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  8717490 accttgcatatattatgcattgtccataccaactgagctaaactcacg 8717537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 32555300 - 32555253
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||| ||| | |||| |||||||||||||    
T  32555300 accttgcatattttatgcattgtccataccaactaagctaaactcacg 32555253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 1644685 - 1644735
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||| |||||||||||||||| |||| | ||||||||||| ||||||    
T  1644685 cagaccttacatattttatgcattgctcataccaactgagctaagctcacg 1644735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 17704066 - 17704012
Alignment:
Q  16 atcacagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||| ||||||||||| | | | ||||||||||| ||||||    
T  17704066 atcacagaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 17704012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 39433459 - 39433409
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||| |||||||||   ||||||||||| ||||||    
T  39433459 cagaccttgcatattttatgtattgttcatatcaactgagctaagctcacg 39433409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 14279586 - 14279635
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacgtg 72  Q
    |||||||||||||||||||||||  || | ||||||| ||||||||||||    
T  14279586 accttgcatattttatgcattgtctataccaactgagttaaactcacgtg 14279635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 37750017 - 37750066
Alignment:
Q  26 ttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    |||||||| |||||||||||||||   |||||||||||||||||| ||||    
T  37750017 ttgcatatattatgcattgttcatatcaactgagctaaactcacgagaac 37750066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 498782 - 498730
Alignment:
Q  18 cacagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||| ||||||||||| ||| | ||||||| ||| ||||||    
T  498782 cacagaccttgcatatattatgcattgtccataccaactgagataacctcacg 498730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 6447236 - 6447188
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||| ||||||||||| ||| | ||||||| ||||||||||    
T  6447236 gaccttgcatatattatgcattgtccataccaactgagttaaactcacg 6447188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 12910819 - 12910867
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| |||||    
T  12910819 agaccttgcatatattatgcattgtccataccaactgagctaatctcac 12910867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 14975877 - 14975925
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||| ||||||||||||||| ||||||| | ||||||||||| ||||||    
T  14975877 gaccctgcatattttatgcactgttcataccaactgagctaagctcacg 14975925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 29499818 - 29499770
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||||| ||| | || |||||||| ||||||    
T  29499818 gaccttgcatattttatgcattgtccataccaattgagctaagctcacg 29499770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 40919373 - 40919417
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaact 66  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||    
T  40919373 gaccttgcatatattatgcattgttcctaccaactgagctaaact 40919417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 37582 - 37529
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaac 75  Q
    |||||||||||||||||||||||||||| | |||| |||||| |||||| ||||    
T  37582 gaccttgcatattttatgcattgttcataccaacttagctaagctcacgagaac 37529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 10772 - 10819
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||||| | | | ||||||||||||||||||    
T  10772 accttgcatattttatgcattgtccttaccaactgagctaaactcacg 10819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 12643 - 12691
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||||||||||| ||| | ||||||||| ||||||||||    
T  12643 gaccttgcatattttatgcattattcgtactaactgagttaaactcacg 12691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 204636 - 204597
Alignment:
Q  23 accttgcatattttatgcattgttcatgctaactgagcta 62  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  204636 accttacatattttatgcattgttcatgccaactgagcta 204597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 5462 - 5416
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaact 66  Q
    |||||||||||||||||||||||||| ||| | ||| ||||||||||    
T  5462 cagaccttgcatattttatgcattgtccataccaaccgagctaaact 5416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 28125 - 28175
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||||||||  ||||||||||| ||| | ||||||||||||||||||    
T  28125 cagaccttgcatacgttatgcattgtccataccaactgagctaaactcacg 28175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 17779 - 17725
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacgtgaacc 76  Q
    |||||||||| | ||||||||||| ||| | |||||||||||||||||| |||||    
T  17779 gaccttgcatgtattatgcattgtccataccaactgagctaaactcacgagaacc 17725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 118868 - 118818
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||||||| ||||||||||||||||||||  | ||||||||||| ||||||    
T  118868 cagaccttacatattttatgcattgttcaaaccaactgagctaagctcacg 118818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 5231 - 5182
Alignment:
Q  20 cagaccttgcatattttatgcattgttcatgctaactgagctaaactcac 69  Q
    |||||||||||||| ||||||||||| ||| | || ||||||||||||||    
T  5231 cagaccttgcatatattatgcattgtccataccaattgagctaaactcac 5182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 44776 - 44825
Alignment:
Q  21 agaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||| | ||||| |||  |||||||||||||||||||    
T  44776 agaccttgcatattttaagaattgtacatattaactgagctaaactcacg 44825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 185307 - 185262
Alignment:
Q  25 cttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    ||||||||||||||||||||| ||| | ||||||||||| ||||||    
T  185307 cttgcatattttatgcattgtccataccaactgagctaagctcacg 185262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 223691 - 223739
Alignment:
Q  22 gaccttgcatattttatgcattgttcatgctaactgagctaaactcacg 70  Q
    |||| ||||||| ||||||||||||||  ||||||||||||| ||||||    
T  223691 gaccatgcatatattatgcattgttcaaactaactgagctaagctcacg 223739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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