View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12242_low_2 (Length: 521)
Name: NF12242_low_2
Description: NF12242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12242_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 38501756 - 38502268
Alignment:
| Q |
1 |
tttaccaacgtgccataccaggagtactcttcattcagccaagaggaccactgttgcttctcgatcttacatcaatatcatctcctttattttattaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38501756 |
tttaccaacgtgccataccaggagtactcttcattctgccaagaggaccactgttgcttctcggtcttacatcaatatcatctcctttattttattaaag |
38501855 |
T |
|
| Q |
101 |
attaaagtttgatttgtaagggatatctctatttgatacttaggattagttcggaaactagtcaatttattgaatatgaactgcatcctagatattatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38501856 |
attaaagtttgatttgtaagggatatctctatttgatacttaggattagttcggaaactagtcaatttattgaatatgaaccgcatcctagatattatta |
38501955 |
T |
|
| Q |
201 |
nnnnnnncctctgctactctggaatttttcctcattttgtctctaattatgaaacctttctatggtaaatttgcaggagccataagtctgtaatggttat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38501956 |
tttttttcctctgctactctggaatttttcctcattttgtctctaattatgaaacctttctatggtaaatttgcaggagccataagtctgtaatggttat |
38502055 |
T |
|
| Q |
301 |
aaggcgtaatcacgttgttggaggcattacatatcgtccatatgcaaggtaataattcgtctctatgtttttatctacctttcaggttctagcagtcctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38502056 |
aaggcgtaatcacgttgttggaggcattacatatcgtccatatgcaaggtaataattcgtctctatgtttttatctacctttcaggttcaagcagtcctt |
38502155 |
T |
|
| Q |
401 |
gctttatattttttcttgtgcatatctatatttatgttgttatattgttattgttcttgtatcaataaccgagaacaaaatgtttacagtaatagtattc |
500 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
38502156 |
gctttatattttttcttgtacatatctatatttatgtcgttatattgttattgttcttgtattaataaccgagaacaaaatgtttacagtaatagtagtc |
38502255 |
T |
|
| Q |
501 |
attatcacaggtt |
513 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38502256 |
attatcacaggtt |
38502268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 26045575 - 26045500
Alignment:
| Q |
275 |
aggagccataagtctgtaatggttataagg---cgtaatcacgttgttggaggcattacatatcgtccatatgcaa |
347 |
Q |
| |
|
|||| |||||||||| |||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26045575 |
aggaaccataagtctataatggttataagggagcctaatcgcgttgttggaggcgttacatatcgtccatatgcaa |
26045500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University