View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12243_high_3 (Length: 313)
Name: NF12243_high_3
Description: NF12243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12243_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 170 - 313
Target Start/End: Original strand, 23929925 - 23930068
Alignment:
| Q |
170 |
aatgattgaagatgtcaagaagaccaaatataagcataaaagaatatcaaatattgaagagtcaacatttcatcagggggtgcatgctatattaattgac |
269 |
Q |
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| T |
23929925 |
aatgattgaagatgtcaggaaggccaaatataagcataaaagaatatcaaatattgaagaatcaacatttcatcaggtggtgcatgctatattaattgac |
23930024 |
T |
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| Q |
270 |
cactggactaagagtagcacacctctccatcgcctacttcattc |
313 |
Q |
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| T |
23930025 |
cactggactaagagtagcacacctctccattgcctacctcattc |
23930068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 23929729 - 23929881
Alignment:
| Q |
11 |
aacctgtgattagtggtcaatgatcttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggt |
110 |
Q |
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| T |
23929729 |
aacctgtgattagtgatcaatgatcttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacgataattggtggaaaaaggt |
23929828 |
T |
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| Q |
111 |
tgattatacattttcgttcatcagtcttatttacgatgttcttataagaactaaca |
166 |
Q |
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| T |
23929829 |
tgattatacactttcgttcacctgtcctattt---atgttcttagaagaactaaca |
23929881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 15319108 - 15319226
Alignment:
| Q |
16 |
gtgattagtggtcaatgatctt---acaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggttg |
112 |
Q |
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| T |
15319108 |
gtgattagtgatcaatgatcttcttacaagaatgatgatgttcaaaaggcgcaatttgtgaatgatactttgttggacaaaaattggtggaaaaaggttg |
15319207 |
T |
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| Q |
113 |
attatacattttcgttcat |
131 |
Q |
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| T |
15319208 |
attatatactttcgttcat |
15319226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 15319305 - 15319404
Alignment:
| Q |
170 |
aatgattgaagatgtcaagaagaccaaatataagcataaaagaatatcaaatattgaagagtcaacatttcatcagggggtgcatgctatattaattgac |
269 |
Q |
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| T |
15319305 |
aatgattgaagatgttaggaaggccatatataagcatgaaagaatatcaaatattcaagagtcactctttcatcatgtagttcatgctatattaattgac |
15319404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 40698028 - 40697938
Alignment:
| Q |
201 |
aagcataaaagaatatcaaatattgaagagtcaaca-tttcatcagggggtgcatgctatattaattgaccactggactaagagtagcaca |
290 |
Q |
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| T |
40698028 |
aagcatgaacgaatatcaaatattcaagagtcaactctttcatcaggtagtgcatgctatattaattgaccacaagactaagaggagcaca |
40697938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 15318163 - 15318079
Alignment:
| Q |
34 |
tcttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggttgattata |
118 |
Q |
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| T |
15318163 |
tcttacaaggatgatgatgttcacaaggtgcaatttgtgaaggatactttgttggacaaatattggtagcaaaaggttgattata |
15318079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 9649910 - 9650057
Alignment:
| Q |
16 |
gtgattagtggtcaatgat---cttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggttg |
112 |
Q |
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| T |
9649910 |
gtgattagtgatcaatgattttcttacaaggaa-atgatgttagaaaggcacaatttgtgaaggatactttgctggataataatcggtgaaaaaaaattg |
9650008 |
T |
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| Q |
113 |
attatacattttcgttcatcagtcttatttacgatgttcttataagaac |
161 |
Q |
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| T |
9650009 |
attatatactttcattcactaatcctatttatgatgtttttagaagaac |
9650057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 9650106 - 9650192
Alignment:
| Q |
170 |
aatgattgaagatgtcaagaagaccaaatataagcataaaagaatatcaaatattgaagagtcaacatttcatcagggggtgcatgc |
256 |
Q |
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| T |
9650106 |
aatgaatggagatgacatgaaggccatatacaagcatgaaagaatatcaaatattgaatagtcactttttcatcaggtagtgcatgc |
9650192 |
T |
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