View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12243_high_4 (Length: 243)
Name: NF12243_high_4
Description: NF12243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12243_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 23930099 - 23930314
Alignment:
| Q |
3 |
gacacttttcaacttacatcttttggattacataaatttatagatatannnnnnnattgtaggtttatagtacataatggctaagtgaagatattattag |
102 |
Q |
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| T |
23930099 |
gacactttttaacttacatcttttggattacataaatttatagatatatttttttattgtaggtttatagttcataatggctaaatgaaaatagtaatag |
23930198 |
T |
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| Q |
103 |
tgtccctcgacatcaagacattgagctcactgagcatagagaaaaatgttt-agaagtttgtctcctgatatagatcaaaggaggaaagtgaacatagag |
201 |
Q |
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| T |
23930199 |
tgtccctcgacat--------tgagctcatttagcatagagaaaaatgttttagaagtttgtctcctgatgtaaatgaaaggaggaaagtgaacatagag |
23930290 |
T |
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| Q |
202 |
tgtgcaaagttcttagatggaaaa |
225 |
Q |
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| T |
23930291 |
tttgcaaagttcttagatggaaaa |
23930314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 40697877 - 40697690
Alignment:
| Q |
21 |
tcttttggattacataaatttatagatatannnnnnnattgtaggt-ttatagtacataatggctaagtgaagatattattagtgtccctcgacatcaag |
119 |
Q |
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| T |
40697877 |
tcttttggattacataaatttatagatatattttt--attggaagtattataatacataatggctaagtgaagatactagtagagtcccttcacatgaag |
40697780 |
T |
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| Q |
120 |
acattgagctcactgagcatagagaaaaatg-tttagaagtttgtctcctgatatagatcaaaggaggaaagtgaacatagagtgtgcaa |
208 |
Q |
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| T |
40697779 |
acattgaactcactgaggaaagagaaaaatgttttagaaggttgtttcttgatgttgatgaaaggaggaaaatgaatgtagagtttgcaa |
40697690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 15319529 - 15319602
Alignment:
| Q |
104 |
gtccctcgacatcaagacattgagctcactgagcatagagaaaaatgttt-agaagtttgtctcctgatataga |
176 |
Q |
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| T |
15319529 |
gtccctccacatcaagacattgagctcactgtggaaagagaaaaatgtttcagaagattgtttcctgatgtaga |
15319602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 35964399 - 35964546
Alignment:
| Q |
78 |
aatggctaagtgaagatattattagtgtccctcgacatcaagacattgagctcactgagcatagagaaaaatg-tttagaagtttgtctcctgatataga |
176 |
Q |
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| T |
35964399 |
aatggataagtgaagatactaatagagtccctccacatcaagccattgagcttactgaggaaagagaaaaatgttttaaaaggttgtttcctgatgtaaa |
35964498 |
T |
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| Q |
177 |
tcaaagg-aggaaagtgaacatagagtgtgcaaagttcttagatggaa |
223 |
Q |
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| T |
35964499 |
tgaaaggaaaaaaagtgaacatagagtttgccaacttctcaaatggaa |
35964546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 35964402 - 35964301
Alignment:
| Q |
121 |
cattgagctcactgagcatagagaaaaatgttt-agaagtttgtctcctgatatagatcaaaggaggaaagtgaacatagagtgtgcaaagttcttagat |
219 |
Q |
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| T |
35964402 |
cattgagctcactgaggaaagagaaaaatgtttcagaagattgtttcttgttgtagatgaaagaaggaaagtgaac--agagtttgcaaacttctcagat |
35964305 |
T |
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| Q |
220 |
ggaa |
223 |
Q |
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|||| |
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| T |
35964304 |
ggaa |
35964301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 9650307 - 9650380
Alignment:
| Q |
76 |
ataatggctaagtgaagatattattagtgtccctcgacatcaa-gacattgagctcactgagcatagagaaaaa |
148 |
Q |
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| T |
9650307 |
ataatggctatgtgaatatactaatagagtccctccacatcaaagacattgagctcactgaggaaagagaaaaa |
9650380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 9650395 - 9650475
Alignment:
| Q |
144 |
aaaaatgtttagaagtttgtctcctgatatagatcaaaggaggaaagtgaacatagagtgtgcaaagttcttagatggaaa |
224 |
Q |
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| T |
9650395 |
aaaaatgttcagaaggttgtttcttgatgtagatgaaaggaggaaattgaatgtagagtttgcaaacttctcagaaggaaa |
9650475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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